Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- peroxisome 1
- mitochondrion 2
- plastid 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43020 | Canola | cytoskeleton, cytosol, peroxisome | 90.18 | 90.18 |
| Bra029001.1-P | Field mustard | cytosol | 89.29 | 89.29 |
| CDY19877 | Canola | cytosol | 53.57 | 88.24 |
| VIT_19s0090g00420.t01 | Wine grape | cytosol, nucleus, peroxisome | 86.61 | 86.61 |
| Solyc07g064620.1.1 | Tomato | cytosol | 84.82 | 84.82 |
| KRH73751 | Soybean | cytosol | 80.36 | 78.95 |
| KRH14395 | Soybean | cytosol | 80.36 | 78.95 |
| PGSC0003DMT400057195 | Potato | cytosol | 83.93 | 65.73 |
| CDY52575 | Canola | cytosol, peroxisome | 90.18 | 63.92 |
| KRH46184 | Soybean | vacuole | 83.93 | 59.87 |
| AT4G27130.1 | Thale cress | cytosol, peroxisome, plastid | 59.82 | 59.29 |
| AT5G54760.3 | Thale cress | cytosol, peroxisome, plastid | 59.82 | 59.29 |
| AT1G54290.1 | Thale cress | cytosol, peroxisome, plastid | 58.04 | 57.52 |
| Solyc10g006280.1.1 | Tomato | cytosol | 61.61 | 56.1 |
| PGSC0003DMT400091273 | Potato | cytosol | 66.07 | 56.06 |
| KRG98759 | Soybean | cytosol | 66.96 | 53.19 |
| HORVU4Hr1G010890.1 | Barley | cytosol, peroxisome | 26.79 | 50.85 |
| Os02t0151501-00 | Rice | cytosol, peroxisome | 24.11 | 47.37 |
| CDY17292 | Canola | cytosol | 91.07 | 43.97 |
| Bra002944.1-P | Field mustard | cytosol | 91.07 | 43.97 |
| Zm00001d004854_P001 | Maize | extracellular | 26.79 | 42.25 |
| Zm00001d007787_P001 | Maize | mitochondrion | 25.89 | 23.2 |
Protein Annotations
| MapMan:17.4.1.1.1 | Gene3D:3.30.780.10 | EntrezGene:835585 | UniProt:A0A178USW9 | ProteinID:AED96560.1 | ProteinID:AED96561.1 |
| EMBL:AF385736 | ProteinID:ANM70932.1 | ArrayExpress:AT5G54940 | EnsemblPlantsGene:AT5G54940 | RefSeq:AT5G54940 | TAIR:AT5G54940 |
| RefSeq:AT5G54940-TAIR-G | EnsemblPlants:AT5G54940.3 | EMBL:AY087132 | EMBL:AY133677 | ProteinID:BAB08773.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 | GO:GO:0006412 | GO:GO:0006413 |
| GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR001950 | RefSeq:NP_001332503.1 | RefSeq:NP_568818.1 | RefSeq:NP_851192.1 | ProteinID:OAO96417.1 | PFAM:PF01253 |
| PIRSF:PIRSF004499 | PFscan:PS50296 | PANTHER:PTHR10388 | PANTHER:PTHR10388:SF36 | UniProt:Q9FFT6 | SUPFAM:SSF55159 |
| InterPro:SUI1 | InterPro:SUI1_dom_sf | InterPro:SUI1_euk | TIGRFAMs:TIGR01160 | UniParc:UPI00000A154E | : |
Description
AT5g54940/MBG8_21 [Source:UniProtKB/TrEMBL;Acc:Q9FFT6]
Coordinates
chr5:-:22308074..22309432
Molecular Weight (calculated)
12718.4 Da
IEP (calculated)
9.735
GRAVY (calculated)
-0.677
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MVELDIQIPS AYDPFAEAKD SDAPGAKENI HIRIQQRNGK KSLTTVQGLK KEYSYERILK DLKKDFCCNG NVVQDKELGK IIQLQGDQRK KVSQFLVQTG
101: IAKKDQIKIH GF
101: IAKKDQIKIH GF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.