CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytoskeleton, cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
cytoskeleton 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, peroxisome
Any Predictor:	cytoskeleton, cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029001.1-P	Field mustard	cytosol	97.32	97.32
CDY19877	Canola	cytosol	56.25	92.65
AT5G54940.3	Thale cress	cytosol, nucleus, peroxisome	90.18	90.18
VIT_19s0090g00420.t01	Wine grape	cytosol, nucleus, peroxisome	85.71	85.71
Solyc07g064620.1.1	Tomato	cytosol	82.14	82.14
KRH14395	Soybean	cytosol	79.46	78.07
KRH73751	Soybean	cytosol	78.57	77.19
CDY52575	Canola	cytosol, peroxisome	100.0	70.89
PGSC0003DMT400057195	Potato	cytosol	81.25	63.64
CDX97378	Canola	cytosol, peroxisome, plastid	62.5	61.95
CDY14282	Canola	cytosol, peroxisome, plastid	62.5	61.95
KRH46184	Soybean	vacuole	85.71	61.15
CDY08224	Canola	cytosol, peroxisome, plastid	60.71	59.13
CDY02466	Canola	cytosol, peroxisome, plastid	60.71	58.62
CDY10602	Canola	cytosol, peroxisome, plastid	60.71	58.62
CDY26128	Canola	cytosol, peroxisome, plastid	59.82	58.26
CDY08222	Canola	cytosol, peroxisome, plastid	59.82	58.26
PGSC0003DMT400091273	Potato	cytosol	66.07	56.06
Solyc10g006280.1.1	Tomato	cytosol	60.71	55.28
KRG98759	Soybean	cytosol	68.75	54.61
Os02t0151501-00	Rice	cytosol, peroxisome	24.11	47.37
CDY17292	Canola	cytosol	93.75	45.26
CDY08751	Canola	cytosol, peroxisome, plastid	39.29	44.44
Zm00001d004854_P001	Maize	extracellular	26.79	42.25
CDY46663	Canola	plastid	62.5	35.71
CDX92777	Canola	mitochondrion	62.5	34.48
CDY33072	Canola	nucleus	40.18	33.83
Zm00001d007787_P001	Maize	mitochondrion	26.79	24.0

Protein Annotations

MapMan:17.4.1.1.1	Gene3D:3.30.780.10	GO:A0A078HX49	UniProt:A0A078HX49	EnsemblPlants:CDY43020	ProteinID:CDY43020
ProteinID:CDY43020.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00075843001	InterPro:IPR001950	PFAM:PF01253	PIRSF:PIRSF004499
PFscan:PS50296	PANTHER:PTHR10388	PANTHER:PTHR10388:SF36	SUPFAM:SSF55159	InterPro:SUI1	InterPro:SUI1_dom_sf
InterPro:SUI1_euk	TIGRFAMs:TIGR01160	UniParc:UPI0004EC66FD	:	:	:

Description

BnaA03g11670DBnaA03g11670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HX49]

Coordinates

chrLK032543:+:28505..29217

Molecular Weight (calculated)

12704.4 Da

IEP (calculated)

9.735

GRAVY (calculated)

-0.589

Length

112 amino acids

Sequence
(BLAST)

001: MVELDIQVPS AFDPFAEAQE SDAPGTKEYI HVRIQQRNGK KSLTTVQGLK KAYSYEKILK DLKKDFCCNG NVVQDKELGK IIQLQGDQRK KVSHFLVQTG
101: IAKKEQIKIH GF

Best Arabidopsis Sequence Match ( AT5G54940.1 )
(BLAST)

001: MVELDIQIPS AYDPFAEAKD SDAPGAKENI HIRIQQRNGK KSLTTVQGLK KEYSYERILK DLKKDFCCNG NVVQDKELGK IIQLQGDQRK KVSQFLVQTG
101: IAKKDQIKIH GF

Arabidopsis Description

AT5g54940/MBG8_21 [Source:UniProtKB/TrEMBL;Acc:Q9FFT6]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.