Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G010890.1 | Barley | cytosol, peroxisome | 36.84 | 83.05 |
| CDX97378 | Canola | cytosol, peroxisome, plastid | 53.38 | 62.83 |
| CDY14282 | Canola | cytosol, peroxisome, plastid | 53.38 | 62.83 |
| CDY08224 | Canola | cytosol, peroxisome, plastid | 53.38 | 61.74 |
| CDY02466 | Canola | cytosol, peroxisome, plastid | 53.38 | 61.21 |
| CDY10602 | Canola | cytosol, peroxisome, plastid | 53.38 | 61.21 |
| CDY08222 | Canola | cytosol, peroxisome, plastid | 51.88 | 60.0 |
| CDY26128 | Canola | cytosol, peroxisome, plastid | 51.88 | 60.0 |
| CDY43020 | Canola | cytoskeleton, cytosol, peroxisome | 33.83 | 40.18 |
| CDY46663 | Canola | plastid | 54.89 | 37.24 |
| CDX92777 | Canola | mitochondrion | 54.14 | 35.47 |
| CDY08751 | Canola | cytosol, peroxisome, plastid | 25.56 | 34.34 |
| CDY52575 | Canola | cytosol, peroxisome | 34.59 | 29.11 |
| CDY17292 | Canola | cytosol | 33.83 | 19.4 |
| CDY19877 | Canola | cytosol | 7.52 | 14.71 |
Protein Annotations
| MapMan:17.4.1.1.1 | Gene3D:3.30.780.10 | GO:A0A078H6N2 | UniProt:A0A078H6N2 | EnsemblPlants:CDY33072 | ProteinID:CDY33072 |
| ProteinID:CDY33072.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 |
| GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00053714001 | InterPro:IPR001950 | PFAM:PF01253 | PFscan:PS50296 |
| PANTHER:PTHR10388 | PANTHER:PTHR10388:SF18 | SUPFAM:SSF55159 | InterPro:SUI1 | InterPro:SUI1_dom_sf | InterPro:SUI1_euk |
| UniParc:UPI0004EEC06F | : | : | : | : | : |
Description
BnaC06g07070DBnaC06g07070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6N2]
Coordinates
chrLK032305:+:272534..284623
Molecular Weight (calculated)
15421.7 Da
IEP (calculated)
10.288
GRAVY (calculated)
-0.553
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTIKYKKSK REQSRSYSEF AFERTLPKRS TTQTILLHSK VISRTLELEQ RNTCTYVFSS RKSVTTVQEL KKEYCYTKIL KDLKKVFCCN GTVVQDSELG
101: QVIQLQGDQR KDVSTFLVQA GLVKKDNIKI HGF
101: QVIQLQGDQR KDVSTFLVQA GLVKKDNIKI HGF
001: MSELDSQVPT AFDPFADANA EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL KKEYSYTKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA
101: GLVKKDNIKI HGF
101: GLVKKDNIKI HGF
Arabidopsis Description
Protein translation factor SUI1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P41568]
SUBAcon: [peroxisome,plastid,cytosol]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.