Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- peroxisome 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27130.1 | CDX74635 | AT5G35750.1 | 18642946 |
| AT4G27130.1 | CDY47297 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G27130.1 | Thale cress | cytosol, peroxisome, plastid | 57.14 | 99.11 |
| CDX97378 | Canola | cytosol, peroxisome, plastid | 57.14 | 99.11 |
| CDY14282 | Canola | cytosol, peroxisome, plastid | 57.14 | 99.11 |
| Bra019068.1-P | Field mustard | cytosol, peroxisome, plastid | 56.63 | 98.23 |
| CDY08224 | Canola | cytosol, peroxisome, plastid | 55.1 | 93.91 |
| CDY02466 | Canola | cytosol, peroxisome, plastid | 55.1 | 93.1 |
| CDY10602 | Canola | cytosol, peroxisome, plastid | 55.1 | 93.1 |
| CDY08222 | Canola | cytosol, peroxisome, plastid | 54.08 | 92.17 |
| CDY26128 | Canola | cytosol, peroxisome, plastid | 54.08 | 92.17 |
| KRH55655 | Soybean | cytosol | 52.04 | 90.27 |
| KRH55654 | Soybean | cytosol | 51.53 | 89.38 |
| KRH25862 | Soybean | cytosol | 51.53 | 89.38 |
| PGSC0003DMT400065815 | Potato | cytosol | 51.02 | 88.5 |
| GSMUA_Achr4P24000_001 | Banana | cytosol | 51.02 | 88.5 |
| PGSC0003DMT400037400 | Potato | cytosol | 50.51 | 87.61 |
| TraesCS3D01G320600.1 | Wheat | cytosol, peroxisome, plastid | 51.02 | 86.96 |
| TraesCS3B01G356600.1 | Wheat | cytosol, peroxisome, plastid | 51.02 | 86.96 |
| TraesCS3A01G327200.1 | Wheat | cytosol, peroxisome, plastid | 51.02 | 86.96 |
| Solyc10g006470.2.1 | Tomato | cytosol | 50.0 | 86.73 |
| GSMUA_Achr9P11860_001 | Banana | cytosol | 50.0 | 86.73 |
| GSMUA_Achr2P14050_001 | Banana | cytosol | 49.49 | 85.84 |
| Solyc07g064150.2.1 | Tomato | cytosol | 49.49 | 85.84 |
| PGSC0003DMT400049575 | Potato | cytosol | 49.49 | 85.84 |
| Os05t0498400-02 | Rice | cytosol | 50.0 | 85.22 |
| GSMUA_Achr1P14620_001 | Banana | cytosol, peroxisome, plastid | 48.98 | 84.96 |
| GSMUA_Achr8P07330_001 | Banana | cytosol, peroxisome, plastid | 48.98 | 84.96 |
| EES18447 | Sorghum | cytosol | 49.49 | 84.35 |
| Os01t0794500-00 | Rice | cytosol, peroxisome, plastid | 49.49 | 84.35 |
| EES03750 | Sorghum | cytosol, peroxisome, plastid | 48.98 | 83.48 |
| TraesCS1B01G329300.1 | Wheat | cytosol | 47.45 | 80.87 |
| TraesCS1D01G316900.1 | Wheat | cytosol | 47.45 | 80.87 |
| TraesCS1A01G316900.1 | Wheat | cytosol | 47.45 | 80.87 |
| HORVU3Hr1G077960.2 | Barley | peroxisome, plastid | 47.45 | 75.61 |
| CDX92777 | Canola | mitochondrion | 76.02 | 73.4 |
| VIT_19s0177g00100.t01 | Wine grape | cytosol, nucleus, peroxisome | 54.08 | 72.11 |
| Zm00001d038594_P002 | Maize | cytosol, peroxisome, plastid | 43.37 | 72.03 |
| GSMUA_Achr7P03360_001 | Banana | cytosol | 23.47 | 66.67 |
| CDY08751 | Canola | cytosol, peroxisome, plastid | 31.63 | 62.63 |
| CDY43020 | Canola | cytoskeleton, cytosol, peroxisome | 35.71 | 62.5 |
| GSMUA_Achr4P27690_001 | Banana | cytosol | 52.55 | 59.88 |
| CDY33072 | Canola | nucleus | 37.24 | 54.89 |
| Zm00001d043217_P002 | Maize | cytosol, golgi, peroxisome | 43.88 | 54.09 |
| CDY19877 | Canola | cytosol | 16.84 | 48.53 |
| GSMUA_Achr7P00190_001 | Banana | cytosol, nucleus, peroxisome, plastid | 54.08 | 48.18 |
| CDY52575 | Canola | cytosol, peroxisome | 38.27 | 47.47 |
| CDY17292 | Canola | cytosol | 38.78 | 32.76 |
Protein Annotations
| MapMan:17.4.1.1.1 | Gene3D:3.30.780.10 | GO:A0A078IBQ8 | UniProt:A0A078IBQ8 | EnsemblPlants:CDY46663 | ProteinID:CDY46663 |
| ProteinID:CDY46663.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 |
| GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00085962001 | InterPro:IPR001950 | PFAM:PF01253 | PFscan:PS50296 |
| PANTHER:PTHR10388 | PANTHER:PTHR10388:SF18 | SUPFAM:SSF55159 | InterPro:SUI1 | InterPro:SUI1_dom_sf | InterPro:SUI1_euk |
| TIGRFAMs:TIGR01160 | UniParc:UPI0004EE6196 | SEG:seg | : | : | : |
Description
BnaA03g48450DBnaA03g48450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBQ8]
Coordinates
chrLK032681:+:39590..41471
Molecular Weight (calculated)
22049.3 Da
IEP (calculated)
9.572
GRAVY (calculated)
-0.406
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTLKELLYN KIIYVFRPKD LIISSSRYFG LHQKQKLQTL SESRVSSSRR SLSSHNQILE TLLFESGIVS ASVSFCPSDQ QSFMSELDSQ VPTAFDPFAD
101: ANAEDSGAGT KEYVHIRVQQ RNGRKSLTTV QGLKKEYSYS KILKDLKKEF CCNGTVVQDS ELGQVIQLQG DQRKNVSTFL VQAGLVKKDN IKIHGF
101: ANAEDSGAGT KEYVHIRVQQ RNGRKSLTTV QGLKKEYSYS KILKDLKKEF CCNGTVVQDS ELGQVIQLQG DQRKNVSTFL VQAGLVKKDN IKIHGF
001: MSELDSQVPT AFDPFADANA EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL KKEYSYTKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA
101: GLVKKDNIKI HGF
101: GLVKKDNIKI HGF
Arabidopsis Description
Protein translation factor SUI1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P41568]
SUBAcon: [peroxisome,plastid,cytosol]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.