Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- mitochondrion 2
- plastid 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P22740_001 | |
| GSMUA_Achr4P17470_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27130.1 | GSMUA_Achr1P22740_001 | AT5G35750.1 | 18642946 |
| AT4G27130.1 | GSMUA_Achr4P17470_001 | AT5G35750.1 | 18642946 |
| AT4G27130.1 | GSMUA_AchrUn_... | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P14620_001 | Banana | cytosol, peroxisome, plastid | 93.81 | 93.81 |
| GSMUA_Achr2P14050_001 | Banana | cytosol | 91.15 | 91.15 |
| Solyc07g064150.2.1 | Tomato | cytosol | 90.27 | 90.27 |
| PGSC0003DMT400049575 | Potato | cytosol | 90.27 | 90.27 |
| GSMUA_Achr4P24000_001 | Banana | cytosol | 90.27 | 90.27 |
| KRH55655 | Soybean | cytosol | 89.38 | 89.38 |
| KRH55654 | Soybean | cytosol | 89.38 | 89.38 |
| KRH25862 | Soybean | cytosol | 89.38 | 89.38 |
| GSMUA_Achr9P11860_001 | Banana | cytosol | 89.38 | 89.38 |
| Solyc10g006470.2.1 | Tomato | cytosol | 88.5 | 88.5 |
| Solyc03g031810.2.1 | Tomato | cytosol | 87.61 | 87.61 |
| PGSC0003DMT400037400 | Potato | cytosol | 87.61 | 87.61 |
| VIT_12s0059g02370.t01 | Wine grape | cytosol | 86.73 | 86.73 |
| AT1G54290.1 | Thale cress | cytosol, peroxisome, plastid | 85.84 | 85.84 |
| KRH25407 | Soybean | cytosol, peroxisome, plastid | 85.84 | 85.84 |
| PGSC0003DMT400065815 | Potato | cytosol | 85.84 | 85.84 |
| KRH56096 | Soybean | cytosol, peroxisome, plastid | 84.96 | 84.96 |
| AT4G27130.1 | Thale cress | cytosol, peroxisome, plastid | 84.96 | 84.96 |
| CDY14282 | Canola | cytosol, peroxisome, plastid | 84.96 | 84.96 |
| Bra026376.1-P | Field mustard | cytosol, peroxisome, plastid | 84.96 | 84.96 |
| CDX97378 | Canola | cytosol, peroxisome, plastid | 84.96 | 84.96 |
| AT5G54760.3 | Thale cress | cytosol, peroxisome, plastid | 84.07 | 84.07 |
| Bra010410.1-P | Field mustard | cytosol, peroxisome, plastid | 84.07 | 84.07 |
| Bra019068.1-P | Field mustard | cytosol, peroxisome, plastid | 84.07 | 84.07 |
| Bra014363.1-P | Field mustard | cytosol, peroxisome, plastid | 84.96 | 83.48 |
| CDY08224 | Canola | cytosol, peroxisome, plastid | 84.96 | 83.48 |
| Bra030890.1-P | Field mustard | cytosol, peroxisome, plastid | 84.96 | 83.48 |
| CDY10602 | Canola | cytosol, peroxisome, plastid | 84.96 | 82.76 |
| CDY02466 | Canola | cytosol, peroxisome, plastid | 84.96 | 82.76 |
| CDY26128 | Canola | cytosol, peroxisome, plastid | 84.07 | 82.61 |
| CDY08222 | Canola | cytosol, peroxisome, plastid | 84.07 | 82.61 |
| GSMUA_Achr7P03360_001 | Banana | cytosol | 46.9 | 76.81 |
| VIT_19s0177g00100.t01 | Wine grape | cytosol, nucleus, peroxisome | 86.73 | 66.67 |
| GSMUA_Achr4P27690_001 | Banana | cytosol | 88.5 | 58.14 |
| CDY08751 | Canola | cytosol, peroxisome, plastid | 49.56 | 56.57 |
| CDY46663 | Canola | plastid | 84.96 | 48.98 |
| CDX92777 | Canola | mitochondrion | 84.96 | 47.29 |
| GSMUA_Achr7P00190_001 | Banana | cytosol, nucleus, peroxisome, plastid | 87.61 | 45.0 |
| PGSC0003DMT400061864 | Potato | cytosol, nucleus, peroxisome | 85.84 | 39.92 |
| Bra012438.1-P | Field mustard | nucleus | 52.21 | 34.3 |
Protein Annotations
| MapMan:17.4.1.1.1 | Gene3D:3.30.780.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 |
| GO:GO:0005488 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr8G07330_001 | EnsemblPlants:GSMUA_Achr8P07330_001 | EnsemblPlants:GSMUA_Achr8T07330_001 |
| InterPro:IPR001950 | UniProt:M0TND6 | PFAM:PF01253 | PIRSF:PIRSF004499 | PFscan:PS50296 | PANTHER:PTHR10388 |
| PANTHER:PTHR10388:SF35 | SUPFAM:SSF55159 | InterPro:SUI1 | InterPro:SUI1_dom_sf | InterPro:SUI1_euk | TIGRFAMs:TIGR01160 |
| UniParc:UPI00029582A7 | : | : | : | : | : |
Description
Protein translation factor SUI1 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr8G07330_001]
Coordinates
chr8:-:4852993..4856649
Molecular Weight (calculated)
12662.1 Da
IEP (calculated)
8.709
GRAVY (calculated)
-0.563
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDLDVQLPT AFDPFAEANA DDSGAGAKEY VHVRVQQRNG RKSLTTVQGL KKEFSYNKIL KDLKKEFCCN GTVVQDPELG QVIQLQGDQR KNVSNFLSQT
101: GIVKKEYIKI HGF
101: GIVKKEYIKI HGF
001: MSDLEVQVPT AFDPFADANA EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL KKEYSYSKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA
101: GLVKKDNIKI HGF
101: GLVKKDNIKI HGF
Arabidopsis Description
Protein translation factor SUI1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JV4]
SUBAcon: [peroxisome,plastid,cytosol]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.