Factsheet for Bra026376.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra035381.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27130.1	Bra035381.1-P	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G27130.1	Thale cress	cytosol, peroxisome, plastid	99.11	99.11
Bra019068.1-P	Field mustard	cytosol, peroxisome, plastid	98.23	98.23
Bra010410.1-P	Field mustard	cytosol, peroxisome, plastid	97.35	97.35
Bra014363.1-P	Field mustard	cytosol, peroxisome, plastid	95.58	93.91
Bra030890.1-P	Field mustard	cytosol, peroxisome, plastid	95.58	93.91
KRH55655	Soybean	cytosol	90.27	90.27
KRH55654	Soybean	cytosol	89.38	89.38
KRH25862	Soybean	cytosol	89.38	89.38
PGSC0003DMT400065815	Potato	cytosol	88.5	88.5
GSMUA_Achr4P24000_001	Banana	cytosol	88.5	88.5
PGSC0003DMT400037400	Potato	cytosol	87.61	87.61
TraesCS3D01G320600.1	Wheat	cytosol, peroxisome, plastid	88.5	86.96
TraesCS3B01G356600.1	Wheat	cytosol, peroxisome, plastid	88.5	86.96
TraesCS3A01G327200.1	Wheat	cytosol, peroxisome, plastid	88.5	86.96
GSMUA_Achr9P11860_001	Banana	cytosol	86.73	86.73
Solyc10g006470.2.1	Tomato	cytosol	86.73	86.73
GSMUA_Achr2P14050_001	Banana	cytosol	85.84	85.84
PGSC0003DMT400049575	Potato	cytosol	85.84	85.84
Solyc07g064150.2.1	Tomato	cytosol	85.84	85.84
Os05t0498400-02	Rice	cytosol	86.73	85.22
GSMUA_Achr8P07330_001	Banana	cytosol, peroxisome, plastid	84.96	84.96
GSMUA_Achr1P14620_001	Banana	cytosol, peroxisome, plastid	84.96	84.96
Os01t0794500-00	Rice	cytosol, peroxisome, plastid	85.84	84.35
EES18447	Sorghum	cytosol	85.84	84.35
EES03750	Sorghum	cytosol, peroxisome, plastid	84.96	83.48
TraesCS1D01G316900.1	Wheat	cytosol	82.3	80.87
TraesCS1B01G329300.1	Wheat	cytosol	82.3	80.87
TraesCS1A01G316900.1	Wheat	cytosol	82.3	80.87
HORVU3Hr1G077960.2	Barley	peroxisome, plastid	81.42	74.8
Zm00001d038594_P002	Maize	cytosol, peroxisome, plastid	75.22	72.03
VIT_19s0177g00100.t01	Wine grape	cytosol, nucleus, peroxisome	88.5	68.03
GSMUA_Achr7P03360_001	Banana	cytosol	40.71	66.67
Bra029001.1-P	Field mustard	cytosol	61.06	61.61
GSMUA_Achr4P27690_001	Banana	cytosol	87.61	57.56
Zm00001d043217_P002	Maize	cytosol, golgi, peroxisome	76.11	54.09
GSMUA_Achr7P00190_001	Banana	cytosol, nucleus, peroxisome, plastid	84.96	43.64
Bra012438.1-P	Field mustard	nucleus	56.64	37.21
Bra002944.1-P	Field mustard	cytosol	61.06	29.74

Protein Annotations

MapMan:17.4.1.1.1	Gene3D:3.30.780.10	EnsemblPlantsGene:Bra026376	EnsemblPlants:Bra026376.1	EnsemblPlants:Bra026376.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR001950	UniProt:M4EC67	PFAM:PF01253	PIRSF:PIRSF004499	PFscan:PS50296	PANTHER:PTHR10388
PANTHER:PTHR10388:SF18	SUPFAM:SSF55159	InterPro:SUI1	InterPro:SUI1_dom_sf	InterPro:SUI1_euk	TIGRFAMs:TIGR01160
UniParc:UPI0001BA8407	:	:	:	:	:

Description

AT4G27130 (E=2e-060) | eukaryotic translation initiation factor SUI1, putative

Coordinates

chrA01:-:9651493..9652215

Molecular Weight (calculated)

12578.9 Da

IEP (calculated)

8.709

GRAVY (calculated)

-0.563

Length

113 amino acids

Sequence
(BLAST)

001: MSELDSQVPT AFDPFADANA EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL KKEYSYSKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA
101: GLVKKDNIKI HGF

Best Arabidopsis Sequence Match ( AT4G27130.1 )
(BLAST)

001: MSELDSQVPT AFDPFADANA EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL KKEYSYTKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA
101: GLVKKDNIKI HGF

Arabidopsis Description

Protein translation factor SUI1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P41568]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.