Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- peroxisome 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P22740_001 | |
| GSMUA_Achr4P17470_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27130.1 | GSMUA_Achr1P22740_001 | AT5G35750.1 | 18642946 |
| AT4G27130.1 | GSMUA_Achr4P17470_001 | AT5G35750.1 | 18642946 |
| AT4G27130.1 | GSMUA_AchrUn_... | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P24000_001 | Banana | cytosol | 48.64 | 94.69 |
| Solyc10g006470.2.1 | Tomato | cytosol | 47.73 | 92.92 |
| Solyc07g064150.2.1 | Tomato | cytosol | 47.73 | 92.92 |
| PGSC0003DMT400049575 | Potato | cytosol | 47.73 | 92.92 |
| GSMUA_Achr2P14050_001 | Banana | cytosol | 47.27 | 92.04 |
| PGSC0003DMT400037400 | Potato | cytosol | 46.82 | 91.15 |
| KRH25862 | Soybean | cytosol | 46.82 | 91.15 |
| GSMUA_Achr9P11860_001 | Banana | cytosol | 46.82 | 91.15 |
| PGSC0003DMT400065815 | Potato | cytosol | 46.36 | 90.27 |
| KRH55655 | Soybean | cytosol | 46.36 | 90.27 |
| KRH55654 | Soybean | cytosol | 46.36 | 90.27 |
| VIT_12s0059g02370.t01 | Wine grape | cytosol | 45.91 | 89.38 |
| GSMUA_Achr1P14620_001 | Banana | cytosol, peroxisome, plastid | 45.45 | 88.5 |
| GSMUA_Achr8P07330_001 | Banana | cytosol, peroxisome, plastid | 45.0 | 87.61 |
| AT1G54290.1 | Thale cress | cytosol, peroxisome, plastid | 44.55 | 86.73 |
| KRH25407 | Soybean | cytosol, peroxisome, plastid | 43.64 | 84.96 |
| Solyc03g031810.2.1 | Tomato | cytosol | 43.64 | 84.96 |
| AT4G27130.1 | Thale cress | cytosol, peroxisome, plastid | 43.64 | 84.96 |
| CDY14282 | Canola | cytosol, peroxisome, plastid | 43.64 | 84.96 |
| CDX97378 | Canola | cytosol, peroxisome, plastid | 43.64 | 84.96 |
| Bra026376.1-P | Field mustard | cytosol, peroxisome, plastid | 43.64 | 84.96 |
| CDY08224 | Canola | cytosol, peroxisome, plastid | 44.09 | 84.35 |
| Bra014363.1-P | Field mustard | cytosol, peroxisome, plastid | 44.09 | 84.35 |
| Bra030890.1-P | Field mustard | cytosol, peroxisome, plastid | 44.09 | 84.35 |
| AT5G54760.3 | Thale cress | cytosol, peroxisome, plastid | 43.18 | 84.07 |
| KRH56096 | Soybean | cytosol, peroxisome, plastid | 43.18 | 84.07 |
| CDY10602 | Canola | cytosol, peroxisome, plastid | 44.09 | 83.62 |
| CDY02466 | Canola | cytosol, peroxisome, plastid | 44.09 | 83.62 |
| Bra010410.1-P | Field mustard | cytosol, peroxisome, plastid | 42.73 | 83.19 |
| Bra019068.1-P | Field mustard | cytosol, peroxisome, plastid | 42.73 | 83.19 |
| CDY26128 | Canola | cytosol, peroxisome, plastid | 43.18 | 82.61 |
| CDY08222 | Canola | cytosol, peroxisome, plastid | 43.18 | 82.61 |
| GSMUA_Achr7P03360_001 | Banana | cytosol | 23.18 | 73.91 |
| VIT_19s0177g00100.t01 | Wine grape | cytosol, nucleus, peroxisome | 46.36 | 69.39 |
| GSMUA_Achr4P27690_001 | Banana | cytosol | 52.27 | 66.86 |
| CDY08751 | Canola | cytosol, peroxisome, plastid | 25.91 | 57.58 |
| CDY46663 | Canola | plastid | 48.18 | 54.08 |
| CDX92777 | Canola | mitochondrion | 47.73 | 51.72 |
| PGSC0003DMT400061864 | Potato | cytosol, nucleus, peroxisome | 44.09 | 39.92 |
| Bra012438.1-P | Field mustard | nucleus | 28.18 | 36.05 |
Protein Annotations
| MapMan:17.4.1.1.1 | Gene3D:3.30.780.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 |
| GO:GO:0005488 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr7G00190_001 | EnsemblPlants:GSMUA_Achr7P00190_001 | EnsemblPlants:GSMUA_Achr7T00190_001 |
| InterPro:IPR001950 | UniProt:M0TDF9 | PFAM:PF01253 | PFscan:PS50296 | PANTHER:PTHR10388 | PANTHER:PTHR10388:SF35 |
| SUPFAM:SSF55159 | InterPro:SUI1 | InterPro:SUI1_dom_sf | InterPro:SUI1_euk | TIGRFAMs:TIGR01160 | UniParc:UPI00029655AC |
| SEG:seg | : | : | : | : | : |
Description
Protein translation factor SUI1 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr7G00190_001]
Coordinates
chr7:-:186747..189521
Molecular Weight (calculated)
24620.6 Da
IEP (calculated)
10.431
GRAVY (calculated)
-0.291
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLLVLLCDR CANLTLDRHR GVENIRSSTR RRRLPHPHPP SHLYIVPSTS ATLSIYNKGE WFQHSFVLLL RVISARVVFQ SAAARSGRGS RSKLAFVSTF
101: PSTVAVFMSD LEAQIPSAFD PFADANADDS GAGTKDYVHI RIQQRNGRKS LTTVQGLKKE FSYNKILKDL KKEFCCNGTV VQDPELGQVI QLQGDQRKNA
201: SNFLVQAGIV KKEHIKIHGF
101: PSTVAVFMSD LEAQIPSAFD PFADANADDS GAGTKDYVHI RIQQRNGRKS LTTVQGLKKE FSYNKILKDL KKEFCCNGTV VQDPELGQVI QLQGDQRKNA
201: SNFLVQAGIV KKEHIKIHGF
001: MSDLEVQVPT AFDPFADANA EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL KKEYSYSKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA
101: GLVKKDNIKI HGF
101: GLVKKDNIKI HGF
Arabidopsis Description
Protein translation factor SUI1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JV4]
SUBAcon: [peroxisome,plastid,cytosol]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.