Factsheet for VIT_12s0059g02370.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
peroxisome 1
mitochondrion 2
plastid 1
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P24000_001	Banana	cytosol	92.92	92.92
KRH56096	Soybean	cytosol, peroxisome, plastid	92.04	92.04
KRH25407	Soybean	cytosol, peroxisome, plastid	92.04	92.04
GSMUA_Achr2P14050_001	Banana	cytosol	91.15	91.15
GSMUA_Achr9P11860_001	Banana	cytosol	91.15	91.15
EES18447	Sorghum	cytosol	90.27	88.7
GSMUA_Achr1P14620_001	Banana	cytosol, peroxisome, plastid	87.61	87.61
Os01t0794500-00	Rice	cytosol, peroxisome, plastid	88.5	86.96
GSMUA_Achr8P07330_001	Banana	cytosol, peroxisome, plastid	86.73	86.73
EES03750	Sorghum	cytosol, peroxisome, plastid	87.61	86.09
Os05t0498400-02	Rice	cytosol	87.61	86.09
TraesCS1A01G316900.1	Wheat	cytosol	87.61	86.09
TraesCS1B01G329300.1	Wheat	cytosol	87.61	86.09
TraesCS1D01G316900.1	Wheat	cytosol	87.61	86.09
TraesCS3A01G327200.1	Wheat	cytosol, peroxisome, plastid	86.73	85.22
TraesCS3B01G356600.1	Wheat	cytosol, peroxisome, plastid	86.73	85.22
TraesCS3D01G320600.1	Wheat	cytosol, peroxisome, plastid	86.73	85.22
HORVU3Hr1G077960.2	Barley	peroxisome, plastid	82.3	75.61
Zm00001d038594_P002	Maize	cytosol, peroxisome, plastid	78.76	75.42
VIT_19s0177g00100.t01	Wine grape	cytosol, nucleus, peroxisome	92.04	70.75
GSMUA_Achr7P03360_001	Banana	cytosol	41.59	68.12
VIT_19s0090g00420.t01	Wine grape	cytosol, nucleus, peroxisome	61.06	61.61
GSMUA_Achr4P27690_001	Banana	cytosol	91.15	59.88
Zm00001d043217_P002	Maize	cytosol, golgi, peroxisome	76.99	54.72
GSMUA_Achr7P00190_001	Banana	cytosol, nucleus, peroxisome, plastid	89.38	45.91

Protein Annotations

EntrezGene:100243115	wikigene:100243115	MapMan:17.4.1.1.1	Gene3D:3.30.780.10	ProteinID:CBI28951	ProteinID:CBI28951.3
UniProt:D7TEM8	EMBL:FN595765	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR001950	EntrezGene:LOC100243115	wikigene:LOC100243115
PFAM:PF01253	PIRSF:PIRSF004499	PFscan:PS50296	PANTHER:PTHR10388	PANTHER:PTHR10388:SF18	SUPFAM:SSF55159
InterPro:SUI1	InterPro:SUI1_dom_sf	InterPro:SUI1_euk	TIGR:TC68660	TIGRFAMs:TIGR01160	UniParc:UPI00019845B7
ArrayExpress:VIT_12s0059g02370	EnsemblPlantsGene:VIT_12s0059g02370	EnsemblPlants:VIT_12s0059g02370.t01	unigene:Vvi.1026	RefSeq:XP_002280157	RefSeq:XP_002280157.1
RefSeq:XP_003633291	RefSeq:XP_003633291.1	:	:	:	:

Description

No Description!

Coordinates

chr12:-:7163065..7166098

Molecular Weight (calculated)

12628.1 Da

IEP (calculated)

8.728

GRAVY (calculated)

-0.548

Length

113 amino acids

Sequence
(BLAST)

001: MSELDANIPT TFDPFADANA EDSGAGTKEY VHVRIQQRNG RKSLTTVQGL KKEFSYNKIL KDLKKEFCCN GTVVQDPELG QVIQLQGDQR KNVSTFLVQA
101: GIVKKENIKI HGF

Best Arabidopsis Sequence Match ( AT4G27130.1 )
(BLAST)

001: MSELDSQVPT AFDPFADANA EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL KKEYSYTKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA
101: GLVKKDNIKI HGF

Arabidopsis Description

Protein translation factor SUI1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P41568]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.