CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 3
peroxisome 1
mitochondrion 2
plastid 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25407	Soybean	cytosol, peroxisome, plastid	97.35	97.35
VIT_12s0059g02370.t01	Wine grape	cytosol	92.04	92.04
KRH25862	Soybean	cytosol	88.5	88.5
KRH55655	Soybean	cytosol	87.61	87.61
GSMUA_Achr4P24000_001	Banana	cytosol	86.73	86.73
GSMUA_Achr9P11860_001	Banana	cytosol	86.73	86.73
KRH55654	Soybean	cytosol	86.73	86.73
GSMUA_Achr1P14620_001	Banana	cytosol, peroxisome, plastid	84.96	84.96
GSMUA_Achr2P14050_001	Banana	cytosol	84.96	84.96
GSMUA_Achr8P07330_001	Banana	cytosol, peroxisome, plastid	84.96	84.96
TraesCS3D01G320600.1	Wheat	cytosol, peroxisome, plastid	85.84	84.35
TraesCS3B01G356600.1	Wheat	cytosol, peroxisome, plastid	85.84	84.35
TraesCS3A01G327200.1	Wheat	cytosol, peroxisome, plastid	85.84	84.35
Os01t0794500-00	Rice	cytosol, peroxisome, plastid	85.84	84.35
EES03750	Sorghum	cytosol, peroxisome, plastid	84.96	83.48
EES18447	Sorghum	cytosol	84.96	83.48
Os05t0498400-02	Rice	cytosol	84.07	82.61
TraesCS1A01G316900.1	Wheat	cytosol	83.19	81.74
TraesCS1B01G329300.1	Wheat	cytosol	83.19	81.74
TraesCS1D01G316900.1	Wheat	cytosol	83.19	81.74
HORVU3Hr1G077960.2	Barley	peroxisome, plastid	80.53	73.98
Zm00001d038594_P002	Maize	cytosol, peroxisome, plastid	75.22	72.03
GSMUA_Achr7P03360_001	Banana	cytosol	40.71	66.67
KRH14395	Soybean	cytosol	59.29	58.77
KRH73751	Soybean	cytosol	57.52	57.02
GSMUA_Achr4P27690_001	Banana	cytosol	86.73	56.98
Zm00001d043217_P002	Maize	cytosol, golgi, peroxisome	76.11	54.09
KRG98759	Soybean	cytosol	61.06	48.94
GSMUA_Achr7P00190_001	Banana	cytosol, nucleus, peroxisome, plastid	84.07	43.18
KRH46184	Soybean	vacuole	58.41	42.04

Protein Annotations

EntrezGene:100788156	MapMan:17.4.1.1.1	Gene3D:3.30.780.10	UniProt:A0A0R0JN76	EMBL:ACUP02004096	EnsemblPlantsGene:GLYMA_06G302800
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR001950	ProteinID:KRH56094.1	ProteinID:KRH56095.1	EnsemblPlants:KRH56096	ProteinID:KRH56096
ProteinID:KRH56096.1	PFAM:PF01253	PIRSF:PIRSF004499	PFscan:PS50296	PANTHER:PTHR10388	PANTHER:PTHR10388:SF18
SUPFAM:SSF55159	InterPro:SUI1	InterPro:SUI1_dom_sf	InterPro:SUI1_euk	TIGRFAMs:TIGR01160	UniParc:UPI0001BA857B

Description

hypothetical protein

Coordinates

chr6:+:49209525..49213006

Molecular Weight (calculated)

12718.2 Da

IEP (calculated)

8.691

GRAVY (calculated)

-0.579

Length

113 amino acids

Sequence
(BLAST)

001: MSEFDTNIPT AFDPFADANA EDSGAGTKEY VHVRVQQRNG RKSLTTVQGL KKEYSYSKIL KDLKKEFCCN GTVVQDPELG QVIQLQGDQR KNVSTFLMQA
101: GIVKKEYIKL HGF

Best Arabidopsis Sequence Match ( AT4G27130.1 )
(BLAST)

001: MSELDSQVPT AFDPFADANA EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL KKEYSYTKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA
101: GLVKKDNIKI HGF

Arabidopsis Description

Protein translation factor SUI1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P41568]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.