CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
peroxisome 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH14106
KRH23029
KRH24840
KRH29844
KRH74010

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27130.1	KRH10294	AT3G46090.1	17259181
AT4G27130.1	KRH23029	AT3G46090.1	17259181
AT4G27130.1	KRH24840	AT3G46090.1	17259181
AT4G27130.1	KRH29844	AT3G46090.1	17259181
AT4G27130.1	KRH14106	AT5G35750.1	18642946
AT4G27130.1	KRH74010	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55654	Soybean	cytosol	99.11	99.11
KRH25862	Soybean	cytosol	99.11	99.11
GSMUA_Achr4P24000_001	Banana	cytosol	92.04	92.04
Solyc03g031810.2.1	Tomato	cytosol	91.15	91.15
GSMUA_Achr9P11860_001	Banana	cytosol	91.15	91.15
GSMUA_Achr2P14050_001	Banana	cytosol	91.15	91.15
AT4G27130.1	Thale cress	cytosol, peroxisome, plastid	90.27	90.27
GSMUA_Achr1P14620_001	Banana	cytosol, peroxisome, plastid	90.27	90.27
CDY14282	Canola	cytosol, peroxisome, plastid	90.27	90.27
CDX97378	Canola	cytosol, peroxisome, plastid	90.27	90.27
Bra026376.1-P	Field mustard	cytosol, peroxisome, plastid	90.27	90.27
AT5G54760.3	Thale cress	cytosol, peroxisome, plastid	89.38	89.38
Bra010410.1-P	Field mustard	cytosol, peroxisome, plastid	89.38	89.38
GSMUA_Achr8P07330_001	Banana	cytosol, peroxisome, plastid	89.38	89.38
Bra019068.1-P	Field mustard	cytosol, peroxisome, plastid	89.38	89.38
KRH25407	Soybean	cytosol, peroxisome, plastid	88.5	88.5
AT1G54290.1	Thale cress	cytosol, peroxisome, plastid	88.5	88.5
KRH56096	Soybean	cytosol, peroxisome, plastid	87.61	87.61
CDY08224	Canola	cytosol, peroxisome, plastid	87.61	86.09
Bra030890.1-P	Field mustard	cytosol, peroxisome, plastid	87.61	86.09
Bra014363.1-P	Field mustard	cytosol, peroxisome, plastid	87.61	86.09
CDY02466	Canola	cytosol, peroxisome, plastid	87.61	85.34
CDY10602	Canola	cytosol, peroxisome, plastid	87.61	85.34
EES03750	Sorghum	cytosol, peroxisome, plastid	85.84	84.35
TraesCS3D01G320600.1	Wheat	cytosol, peroxisome, plastid	85.84	84.35
CDY26128	Canola	cytosol, peroxisome, plastid	85.84	84.35
TraesCS3B01G356600.1	Wheat	cytosol, peroxisome, plastid	85.84	84.35
Os01t0794500-00	Rice	cytosol, peroxisome, plastid	85.84	84.35
CDY08222	Canola	cytosol, peroxisome, plastid	85.84	84.35
TraesCS3A01G327200.1	Wheat	cytosol, peroxisome, plastid	85.84	84.35
EES18447	Sorghum	cytosol	84.96	83.48
Os05t0498400-02	Rice	cytosol	84.96	83.48
TraesCS1B01G329300.1	Wheat	cytosol	83.19	81.74
TraesCS1A01G316900.1	Wheat	cytosol	83.19	81.74
TraesCS1D01G316900.1	Wheat	cytosol	83.19	81.74
Zm00001d038594_P002	Maize	cytosol, peroxisome, plastid	76.99	73.73
HORVU3Hr1G077960.2	Barley	peroxisome, plastid	79.65	73.17
GSMUA_Achr7P03360_001	Banana	cytosol	43.36	71.01
VIT_19s0177g00100.t01	Wine grape	cytosol, nucleus, peroxisome	91.15	70.07
KRH14395	Soybean	cytosol	61.06	60.53
GSMUA_Achr4P27690_001	Banana	cytosol	91.15	59.88
KRH73751	Soybean	cytosol	59.29	58.77
CDY08751	Canola	cytosol, peroxisome, plastid	50.44	57.58
Zm00001d043217_P002	Maize	cytosol, golgi, peroxisome	76.99	54.72
CDY46663	Canola	plastid	90.27	52.04
KRG98759	Soybean	cytosol	63.72	51.06
CDX92777	Canola	mitochondrion	90.27	50.25
GSMUA_Achr7P00190_001	Banana	cytosol, nucleus, peroxisome, plastid	90.27	46.36
KRH46184	Soybean	vacuole	61.06	43.95
PGSC0003DMT400061864	Potato	cytosol, nucleus, peroxisome	89.38	41.56
Bra012438.1-P	Field mustard	nucleus	52.21	34.3

Protein Annotations

EntrezGene:100499833	MapMan:17.4.1.1.1	Gene3D:3.30.780.10	EMBL:ACUP02004031	EMBL:BT089770	UniProt:C6SX76
EnsemblPlantsGene:GLYMA_06G269600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR001950	EnsemblPlants:KRH55655	ProteinID:KRH55655	ProteinID:KRH55655.1
PFAM:PF01253	PIRSF:PIRSF004499	PFscan:PS50296	PANTHER:PTHR10388	PANTHER:PTHR10388:SF18	SUPFAM:SSF55159
InterPro:SUI1	InterPro:SUI1_dom_sf	InterPro:SUI1_euk	TIGRFAMs:TIGR01160	UniParc:UPI0001B15210	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:45836361..45838829

Molecular Weight (calculated)

12623.0 Da

IEP (calculated)

8.229

GRAVY (calculated)

-0.567

Length

113 amino acids

Sequence
(BLAST)

001: MSELDDQIPT AFDPFADANA DDSGAGSKEY VHIRVQQRNG RKSLTTVQGL KKEFSYNKIL KDVKKEFCCN GTVVQDPELG QVIQLQGDQR KNVSTFLVQA
101: GIVKKDHIKI HGF

Best Arabidopsis Sequence Match ( AT4G27130.1 )
(BLAST)

001: MSELDSQVPT AFDPFADANA EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL KKEYSYTKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA
101: GLVKKDNIKI HGF

Arabidopsis Description

Protein translation factor SUI1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P41568]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.