CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74635
CDY47297

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27130.1	CDX74635	AT5G35750.1	18642946
AT4G27130.1	CDY47297	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97378	Canola	cytosol, peroxisome, plastid	55.17	99.11
AT4G27130.1	Thale cress	cytosol, peroxisome, plastid	55.17	99.11
CDY14282	Canola	cytosol, peroxisome, plastid	55.17	99.11
Bra019068.1-P	Field mustard	cytosol, peroxisome, plastid	54.68	98.23
CDY08224	Canola	cytosol, peroxisome, plastid	53.2	93.91
CDY02466	Canola	cytosol, peroxisome, plastid	53.2	93.1
CDY10602	Canola	cytosol, peroxisome, plastid	53.2	93.1
CDY08222	Canola	cytosol, peroxisome, plastid	52.22	92.17
CDY26128	Canola	cytosol, peroxisome, plastid	52.22	92.17
KRH55655	Soybean	cytosol	50.25	90.27
KRH25862	Soybean	cytosol	49.75	89.38
KRH55654	Soybean	cytosol	49.75	89.38
GSMUA_Achr4P24000_001	Banana	cytosol	49.26	88.5
PGSC0003DMT400065815	Potato	cytosol	49.26	88.5
PGSC0003DMT400037400	Potato	cytosol	48.77	87.61
TraesCS3A01G327200.1	Wheat	cytosol, peroxisome, plastid	49.26	86.96
TraesCS3B01G356600.1	Wheat	cytosol, peroxisome, plastid	49.26	86.96
TraesCS3D01G320600.1	Wheat	cytosol, peroxisome, plastid	49.26	86.96
GSMUA_Achr9P11860_001	Banana	cytosol	48.28	86.73
Solyc10g006470.2.1	Tomato	cytosol	48.28	86.73
GSMUA_Achr2P14050_001	Banana	cytosol	47.78	85.84
Solyc07g064150.2.1	Tomato	cytosol	47.78	85.84
PGSC0003DMT400049575	Potato	cytosol	47.78	85.84
Os05t0498400-02	Rice	cytosol	48.28	85.22
GSMUA_Achr1P14620_001	Banana	cytosol, peroxisome, plastid	47.29	84.96
GSMUA_Achr8P07330_001	Banana	cytosol, peroxisome, plastid	47.29	84.96
EES18447	Sorghum	cytosol	47.78	84.35
Os01t0794500-00	Rice	cytosol, peroxisome, plastid	47.78	84.35
EES03750	Sorghum	cytosol, peroxisome, plastid	47.29	83.48
TraesCS1B01G329300.1	Wheat	cytosol	45.81	80.87
TraesCS1D01G316900.1	Wheat	cytosol	45.81	80.87
TraesCS1A01G316900.1	Wheat	cytosol	45.81	80.87
CDY46663	Canola	plastid	73.4	76.02
HORVU3Hr1G077960.2	Barley	peroxisome, plastid	45.81	75.61
Zm00001d038594_P002	Maize	cytosol, peroxisome, plastid	41.87	72.03
VIT_19s0177g00100.t01	Wine grape	cytosol, nucleus, peroxisome	50.74	70.07
GSMUA_Achr7P03360_001	Banana	cytosol	22.66	66.67
CDY08751	Canola	cytosol, peroxisome, plastid	30.54	62.63
CDY43020	Canola	cytoskeleton, cytosol, peroxisome	34.48	62.5
GSMUA_Achr4P27690_001	Banana	cytosol	52.71	62.21
CDY33072	Canola	nucleus	35.47	54.14
Zm00001d043217_P002	Maize	cytosol, golgi, peroxisome	42.36	54.09
CDY19877	Canola	cytosol	16.26	48.53
GSMUA_Achr7P00190_001	Banana	cytosol, nucleus, peroxisome, plastid	51.72	47.73
CDY52575	Canola	cytosol, peroxisome	36.45	46.84
CDY17292	Canola	cytosol	36.45	31.9

Protein Annotations

MapMan:17.4.1.1.1	Gene3D:3.30.780.10	GO:A0A078DV58	EnsemblPlants:CDX92777	ProteinID:CDX92777	ProteinID:CDX92777.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00154601001	InterPro:IPR001950	PFAM:PF01253	PFscan:PS50296	PANTHER:PTHR10388
PANTHER:PTHR10388:SF18	SUPFAM:SSF55159	InterPro:SUI1	InterPro:SUI1_dom_sf	InterPro:SUI1_euk	TIGRFAMs:TIGR01160
UniParc:UPI0004EF2C24	:	:	:	:	:

Description

BnaC07g40350D

Coordinates

chrLK031873:+:797218..799028

Molecular Weight (calculated)

23057.9 Da

IEP (calculated)

9.920

GRAVY (calculated)

-0.349

Length

203 amino acids

Sequence
(BLAST)

001: MFIPRLARIL IYKKPKPNKR LKIRFQTEIS LSPLPLVTFC LHQKQKLQTL SESRVSYRPS LFSHNQILET LLFESGVSFC VVCPSDQQSF MSELDSQVPT
101: AFDPFADANA EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL KKEYSYSKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA GLVKKDNIKI
201: HGF

Best Arabidopsis Sequence Match ( AT4G27130.1 )
(BLAST)

001: MSELDSQVPT AFDPFADANA EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL KKEYSYTKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA
101: GLVKKDNIKI HGF

Arabidopsis Description

Protein translation factor SUI1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P41568]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.