Factsheet for VIT_19s0177g00100.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

plastid 2
nucleus 3
peroxisome 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0057g00690.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27130.1	VIT_12s0057g00690.t01	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0059g02370.t01	Wine grape	cytosol	70.75	92.04
KRH25862	Soybean	cytosol	70.75	92.04
KRH55655	Soybean	cytosol	70.07	91.15
KRH55654	Soybean	cytosol	69.39	90.27
GSMUA_Achr9P11860_001	Banana	cytosol	69.39	90.27
GSMUA_Achr4P24000_001	Banana	cytosol	69.39	90.27
Os01t0794500-00	Rice	cytosol, peroxisome, plastid	70.07	89.57
Solyc03g031810.2.1	Tomato	cytosol	68.71	89.38
GSMUA_Achr2P14050_001	Banana	cytosol	68.71	89.38
EES18447	Sorghum	cytosol	69.39	88.7
EES03750	Sorghum	cytosol, peroxisome, plastid	69.39	88.7
AT4G27130.1	Thale cress	cytosol, peroxisome, plastid	68.03	88.5
CDY14282	Canola	cytosol, peroxisome, plastid	68.03	88.5
CDX97378	Canola	cytosol, peroxisome, plastid	68.03	88.5
Bra026376.1-P	Field mustard	cytosol, peroxisome, plastid	68.03	88.5
AT5G54760.3	Thale cress	cytosol, peroxisome, plastid	67.35	87.61
GSMUA_Achr1P14620_001	Banana	cytosol, peroxisome, plastid	67.35	87.61
Bra010410.1-P	Field mustard	cytosol, peroxisome, plastid	67.35	87.61
Bra019068.1-P	Field mustard	cytosol, peroxisome, plastid	67.35	87.61
TraesCS3A01G327200.1	Wheat	cytosol, peroxisome, plastid	68.03	86.96
TraesCS1D01G316900.1	Wheat	cytosol	68.03	86.96
TraesCS1B01G329300.1	Wheat	cytosol	68.03	86.96
TraesCS1A01G316900.1	Wheat	cytosol	68.03	86.96
TraesCS3B01G356600.1	Wheat	cytosol, peroxisome, plastid	68.03	86.96
Os05t0498400-02	Rice	cytosol	68.03	86.96
TraesCS3D01G320600.1	Wheat	cytosol, peroxisome, plastid	68.03	86.96
GSMUA_Achr8P07330_001	Banana	cytosol, peroxisome, plastid	66.67	86.73
AT1G54290.1	Thale cress	cytosol, peroxisome, plastid	66.67	86.73
Bra014363.1-P	Field mustard	cytosol, peroxisome, plastid	65.99	84.35
Bra030890.1-P	Field mustard	cytosol, peroxisome, plastid	65.99	84.35
CDY08224	Canola	cytosol, peroxisome, plastid	65.99	84.35
CDY02466	Canola	cytosol, peroxisome, plastid	65.99	83.62
CDY10602	Canola	cytosol, peroxisome, plastid	65.99	83.62
CDY26128	Canola	cytosol, peroxisome, plastid	64.63	82.61
CDY08222	Canola	cytosol, peroxisome, plastid	64.63	82.61
HORVU3Hr1G077960.2	Barley	peroxisome, plastid	64.63	77.24
Zm00001d038594_P002	Maize	cytosol, peroxisome, plastid	61.22	76.27
GSMUA_Achr7P03360_001	Banana	cytosol	34.69	73.91
VIT_19s0090g00420.t01	Wine grape	cytosol, nucleus, peroxisome	48.3	63.39
GSMUA_Achr4P27690_001	Banana	cytosol	73.47	62.79
Zm00001d043217_P002	Maize	cytosol, golgi, peroxisome	61.22	56.6
CDY08751	Canola	cytosol, peroxisome, plastid	37.41	55.56
CDY46663	Canola	plastid	72.11	54.08
CDX92777	Canola	mitochondrion	70.07	50.74
GSMUA_Achr7P00190_001	Banana	cytosol, nucleus, peroxisome, plastid	69.39	46.36
PGSC0003DMT400061864	Potato	cytosol, nucleus, peroxisome	68.71	41.56
Bra012438.1-P	Field mustard	nucleus	38.78	33.14

Protein Annotations

EntrezGene:100245122	wikigene:100245122	MapMan:17.4.1.1.1	Gene3D:3.30.780.10	ProteinID:CCB48799	ProteinID:CCB48799.1
UniProt:F6H9A6	EMBL:FN595498	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR001950	EntrezGene:LOC100245122	wikigene:LOC100245122
PFAM:PF01253	PIRSF:PIRSF004499	PFscan:PS50296	PANTHER:PTHR10388	PANTHER:PTHR10388:SF35	SUPFAM:SSF55159
InterPro:SUI1	InterPro:SUI1_dom_sf	InterPro:SUI1_euk	TIGR:TC64269	TIGR:TC66902	TIGRFAMs:TIGR01160
UniParc:UPI000210A3B6	ArrayExpress:VIT_19s0177g00100	EnsemblPlantsGene:VIT_19s0177g00100	EnsemblPlants:VIT_19s0177g00100.t01	RefSeq:XP_002281872	RefSeq:XP_002281872.1
RefSeq:XP_002281891	RefSeq:XP_002281891.1	:	:	:	:

Description

No Description!

Coordinates

chr19:+:5929703..5931655

Molecular Weight (calculated)

16569.8 Da

IEP (calculated)

8.720

GRAVY (calculated)

-0.511

Length

147 amino acids

Sequence
(BLAST)

001: MEINWLEISF SGRKSEKILS SKSQGSINFQ QPSFMSELDI QIPTAFDPFA EANAEDSGAG SKDYVHIRIQ QRNGRKSLTT VQGLRKEFSY NKILKDLKKE
101: FCCNGTVVQD PELGQVIQLQ GDQRKNVSTF LVQAGIVKKE DIKIHGF

Best Arabidopsis Sequence Match ( AT4G27130.1 )
(BLAST)

001: MSELDSQVPT AFDPFADANA EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL KKEYSYTKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA
101: GLVKKDNIKI HGF

Arabidopsis Description

Protein translation factor SUI1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P41568]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.