Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- peroxisome 1
- mitochondrion 2
- plastid 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G27130.1 | Thale cress | cytosol, peroxisome, plastid | 99.11 | 99.11 |
| AT1G54290.1 | Thale cress | cytosol, peroxisome, plastid | 95.58 | 95.58 |
| KRH55655 | Soybean | cytosol | 89.38 | 89.38 |
| KRH55654 | Soybean | cytosol | 88.5 | 88.5 |
| KRH25862 | Soybean | cytosol | 88.5 | 88.5 |
| PGSC0003DMT400065815 | Potato | cytosol | 87.61 | 87.61 |
| GSMUA_Achr4P24000_001 | Banana | cytosol | 87.61 | 87.61 |
| PGSC0003DMT400037400 | Potato | cytosol | 86.73 | 86.73 |
| TraesCS3D01G320600.1 | Wheat | cytosol, peroxisome, plastid | 87.61 | 86.09 |
| TraesCS3A01G327200.1 | Wheat | cytosol, peroxisome, plastid | 87.61 | 86.09 |
| TraesCS3B01G356600.1 | Wheat | cytosol, peroxisome, plastid | 87.61 | 86.09 |
| Solyc10g006470.2.1 | Tomato | cytosol | 85.84 | 85.84 |
| GSMUA_Achr9P11860_001 | Banana | cytosol | 85.84 | 85.84 |
| Solyc07g064150.2.1 | Tomato | cytosol | 84.96 | 84.96 |
| GSMUA_Achr2P14050_001 | Banana | cytosol | 84.96 | 84.96 |
| PGSC0003DMT400049575 | Potato | cytosol | 84.96 | 84.96 |
| Os05t0498400-02 | Rice | cytosol | 85.84 | 84.35 |
| GSMUA_Achr8P07330_001 | Banana | cytosol, peroxisome, plastid | 84.07 | 84.07 |
| GSMUA_Achr1P14620_001 | Banana | cytosol, peroxisome, plastid | 84.07 | 84.07 |
| EES18447 | Sorghum | cytosol | 84.96 | 83.48 |
| Os01t0794500-00 | Rice | cytosol, peroxisome, plastid | 84.96 | 83.48 |
| EES03750 | Sorghum | cytosol, peroxisome, plastid | 84.07 | 82.61 |
| TraesCS1A01G316900.1 | Wheat | cytosol | 81.42 | 80.0 |
| TraesCS1B01G329300.1 | Wheat | cytosol | 81.42 | 80.0 |
| TraesCS1D01G316900.1 | Wheat | cytosol | 81.42 | 80.0 |
| HORVU3Hr1G077960.2 | Barley | peroxisome, plastid | 80.53 | 73.98 |
| Zm00001d038594_P002 | Maize | cytosol, peroxisome, plastid | 74.34 | 71.19 |
| GSMUA_Achr7P03360_001 | Banana | cytosol | 41.59 | 68.12 |
| VIT_19s0177g00100.t01 | Wine grape | cytosol, nucleus, peroxisome | 87.61 | 67.35 |
| AT5G54940.3 | Thale cress | cytosol, nucleus, peroxisome | 59.29 | 59.82 |
| GSMUA_Achr4P27690_001 | Banana | cytosol | 86.73 | 56.98 |
| Zm00001d043217_P002 | Maize | cytosol, golgi, peroxisome | 75.22 | 53.46 |
| GSMUA_Achr7P00190_001 | Banana | cytosol, nucleus, peroxisome, plastid | 84.07 | 43.18 |
Protein Annotations
| MapMan:17.4.1.1.1 | Gene3D:3.30.780.10 | EntrezGene:835566 | UniProt:A0A178UDM2 | ProteinID:AED96536.1 | ProteinID:AED96537.1 |
| ProteinID:AED96538.1 | ProteinID:ANM69950.1 | ArrayExpress:AT5G54760 | EnsemblPlantsGene:AT5G54760 | RefSeq:AT5G54760 | TAIR:AT5G54760 |
| RefSeq:AT5G54760-TAIR-G | EnsemblPlants:AT5G54760.3 | TAIR:AT5G54760.3 | Unigene:At.7195 | ProteinID:BAB08755.1 | EMBL:BT005836 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 | GO:GO:0006412 |
| GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:IPR001950 | RefSeq:NP_001119436.1 | RefSeq:NP_001190540.1 | RefSeq:NP_001331594.1 | RefSeq:NP_200287.1 |
| ProteinID:OAO91976.1 | PFAM:PF01253 | PIRSF:PIRSF004499 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50296 | PANTHER:PTHR10388 | PANTHER:PTHR10388:SF18 | UniProt:Q9FFV1 | SUPFAM:SSF55159 |
| InterPro:SUI1 | InterPro:SUI1_dom_sf | InterPro:SUI1_euk | TIGRFAMs:TIGR01160 | UniParc:UPI0000060D60 | : |
Description
At5g54760 [Source:UniProtKB/TrEMBL;Acc:Q9FFV1]
Coordinates
chr5:+:22243800..22245764
Molecular Weight (calculated)
12621.0 Da
IEP (calculated)
8.709
GRAVY (calculated)
-0.541
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MSELDSQVPT AFDPFADANV EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL KKEYSYTKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA
101: GLVKKDNIKI HGF
101: GLVKKDNIKI HGF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.