Factsheet for GSMUA_Achr4P27690_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 1
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P22740_001
GSMUA_Achr4P17470_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27130.1	GSMUA_Achr1P22740_001	AT5G35750.1	18642946
AT4G27130.1	GSMUA_Achr4P17470_001	AT5G35750.1	18642946
AT4G27130.1	GSMUA_AchrUn_...	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P11860_001	Banana	cytosol	62.79	95.58
Solyc07g064150.2.1	Tomato	cytosol	62.21	94.69
PGSC0003DMT400049575	Potato	cytosol	62.21	94.69
GSMUA_Achr4P24000_001	Banana	cytosol	61.63	93.81
GSMUA_Achr2P14050_001	Banana	cytosol	61.05	92.92
Solyc10g006470.2.1	Tomato	cytosol	61.05	92.92
PGSC0003DMT400065815	Potato	cytosol	60.47	92.04
KRH25862	Soybean	cytosol	60.47	92.04
KRH55655	Soybean	cytosol	59.88	91.15
GSMUA_Achr1P14620_001	Banana	cytosol, peroxisome, plastid	59.88	91.15
KRH55654	Soybean	cytosol	59.88	91.15
PGSC0003DMT400037400	Potato	cytosol	59.88	91.15
VIT_12s0059g02370.t01	Wine grape	cytosol	59.88	91.15
AT1G54290.1	Thale cress	cytosol, peroxisome, plastid	58.72	89.38
GSMUA_Achr8P07330_001	Banana	cytosol, peroxisome, plastid	58.14	88.5
KRH25407	Soybean	cytosol, peroxisome, plastid	57.56	87.61
AT4G27130.1	Thale cress	cytosol, peroxisome, plastid	57.56	87.61
CDY14282	Canola	cytosol, peroxisome, plastid	57.56	87.61
Bra026376.1-P	Field mustard	cytosol, peroxisome, plastid	57.56	87.61
CDX97378	Canola	cytosol, peroxisome, plastid	57.56	87.61
Bra014363.1-P	Field mustard	cytosol, peroxisome, plastid	58.14	86.96
CDY08224	Canola	cytosol, peroxisome, plastid	58.14	86.96
Bra030890.1-P	Field mustard	cytosol, peroxisome, plastid	58.14	86.96
Solyc03g031810.2.1	Tomato	cytosol	56.98	86.73
AT5G54760.3	Thale cress	cytosol, peroxisome, plastid	56.98	86.73
KRH56096	Soybean	cytosol, peroxisome, plastid	56.98	86.73
CDY02466	Canola	cytosol, peroxisome, plastid	58.14	86.21
CDY10602	Canola	cytosol, peroxisome, plastid	58.14	86.21
Bra019068.1-P	Field mustard	cytosol, peroxisome, plastid	56.4	85.84
Bra010410.1-P	Field mustard	cytosol, peroxisome, plastid	56.4	85.84
CDY26128	Canola	cytosol, peroxisome, plastid	56.98	85.22
CDY08222	Canola	cytosol, peroxisome, plastid	56.98	85.22
GSMUA_Achr7P03360_001	Banana	cytosol	29.65	73.91
VIT_19s0177g00100.t01	Wine grape	cytosol, nucleus, peroxisome	62.79	73.47
CDY08751	Canola	cytosol, peroxisome, plastid	34.88	60.61
CDX92777	Canola	mitochondrion	62.21	52.71
CDY46663	Canola	plastid	59.88	52.55
GSMUA_Achr7P00190_001	Banana	cytosol, nucleus, peroxisome, plastid	66.86	52.27
PGSC0003DMT400061864	Potato	cytosol, nucleus, peroxisome	56.4	39.92
Bra012438.1-P	Field mustard	nucleus	37.21	37.21

Protein Annotations

MapMan:17.4.1.1.1	Gene3D:3.30.780.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr4G27690_001	EnsemblPlants:GSMUA_Achr4P27690_001	EnsemblPlants:GSMUA_Achr4T27690_001
InterPro:IPR001950	UniProt:M0SSN1	PFAM:PF01253	PFscan:PS50296	PANTHER:PTHR10388	PANTHER:PTHR10388:SF35
SUPFAM:SSF55159	InterPro:SUI1	InterPro:SUI1_dom_sf	InterPro:SUI1_euk	TIGRFAMs:TIGR01160	UniParc:UPI0002954EC4

Description

Protein translation factor SUI1 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr4G27690_001]

Coordinates

chr4:-:26446830..26449327

Molecular Weight (calculated)

19158.2 Da

IEP (calculated)

9.619

GRAVY (calculated)

-0.275

Length

172 amino acids

Sequence
(BLAST)

001: MRASRITACR SLHAVPTKTV EEGVVIACDL QRGLIHLVLS ELEKPANRFR QSPSIVPVFM SDLNVQIPTA FDPFADANAE DSGAGTKDYV HIRIQQRNGR
101: KSLTTVQGLK KEFSYNKILK DLKKEFCCNG TVVQDPELGQ VIQLQGDQRK NVSSFLVQAG IVKKEHIKIH GF

Best Arabidopsis Sequence Match ( AT1G54290.1 )
(BLAST)

001: MSDLEVQVPT AFDPFADANA EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL KKEYSYSKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA
101: GLVKKDNIKI HGF

Arabidopsis Description

Protein translation factor SUI1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JV4]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.