Factsheet for Bra012438.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra035381.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27130.1	Bra035381.1-P	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08751	Canola	cytosol, peroxisome, plastid	52.33	90.91
Bra026376.1-P	Field mustard	cytosol, peroxisome, plastid	37.21	56.64
AT4G27130.1	Thale cress	cytosol, peroxisome, plastid	36.63	55.75
Bra019068.1-P	Field mustard	cytosol, peroxisome, plastid	36.05	54.87
Bra014363.1-P	Field mustard	cytosol, peroxisome, plastid	36.63	54.78
Bra030890.1-P	Field mustard	cytosol, peroxisome, plastid	36.63	54.78
Bra010410.1-P	Field mustard	cytosol, peroxisome, plastid	35.47	53.98
GSMUA_Achr9P11860_001	Banana	cytosol	35.47	53.98
GSMUA_Achr2P14050_001	Banana	cytosol	34.88	53.1
GSMUA_Achr8P07330_001	Banana	cytosol, peroxisome, plastid	34.3	52.21
KRH55655	Soybean	cytosol	34.3	52.21
KRH55654	Soybean	cytosol	34.3	52.21
KRH25862	Soybean	cytosol	34.3	52.21
GSMUA_Achr4P24000_001	Banana	cytosol	34.3	52.21
PGSC0003DMT400065815	Potato	cytosol	33.72	51.33
GSMUA_Achr1P14620_001	Banana	cytosol, peroxisome, plastid	33.72	51.33
Os05t0498400-02	Rice	cytosol	34.3	51.3
TraesCS3B01G356600.1	Wheat	cytosol, peroxisome, plastid	34.3	51.3
TraesCS3A01G327200.1	Wheat	cytosol, peroxisome, plastid	34.3	51.3
Os01t0794500-00	Rice	cytosol, peroxisome, plastid	34.3	51.3
EES03750	Sorghum	cytosol, peroxisome, plastid	34.3	51.3
EES18447	Sorghum	cytosol	34.3	51.3
TraesCS3D01G320600.1	Wheat	cytosol, peroxisome, plastid	34.3	51.3
PGSC0003DMT400037400	Potato	cytosol	33.14	50.44
PGSC0003DMT400049575	Potato	cytosol	33.14	50.44
Solyc07g064150.2.1	Tomato	cytosol	33.14	50.44
Solyc10g006470.2.1	Tomato	cytosol	33.14	50.44
Zm00001d038594_P002	Maize	cytosol, peroxisome, plastid	34.3	50.0
TraesCS1A01G316900.1	Wheat	cytosol	33.14	49.57
TraesCS1B01G329300.1	Wheat	cytosol	33.14	49.57
TraesCS1D01G316900.1	Wheat	cytosol	33.14	49.57
HORVU3Hr1G077960.2	Barley	peroxisome, plastid	34.3	47.97
Bra029001.1-P	Field mustard	cytosol	26.74	41.07
VIT_19s0177g00100.t01	Wine grape	cytosol, nucleus, peroxisome	33.14	38.78
Zm00001d043217_P002	Maize	cytosol, golgi, peroxisome	34.88	37.74
GSMUA_Achr4P27690_001	Banana	cytosol	37.21	37.21
GSMUA_Achr7P03360_001	Banana	cytosol	14.53	36.23
GSMUA_Achr7P00190_001	Banana	cytosol, nucleus, peroxisome, plastid	36.05	28.18
Bra002944.1-P	Field mustard	cytosol	28.49	21.12

Protein Annotations

MapMan:17.4.1.1.1	Gene3D:3.30.780.10	EnsemblPlantsGene:Bra012438	EnsemblPlants:Bra012438.1	EnsemblPlants:Bra012438.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR001950	UniProt:M4D7H8	PFAM:PF01253	PFscan:PS50296	PANTHER:PTHR10388	PANTHER:PTHR10388:SF35
SUPFAM:SSF55159	InterPro:SUI1	InterPro:SUI1_dom_sf	InterPro:SUI1_euk	UniParc:UPI0002540B83	:

Description

AT1G54290 (E=1e-029) | eukaryotic translation initiation factor SUI1, putative

Coordinates

chrA07:+:7593304..7596577

Molecular Weight (calculated)

18753.1 Da

IEP (calculated)

9.921

GRAVY (calculated)

-0.624

Length

172 amino acids

Sequence
(BLAST)

001: MSSNGKPISE KPSRVETESV PGPINPVGTP YVSSSHSIVD PHSKQSEGEA SVTSCLTKLS GKTTGSSGVL NGLPKSKNPN DPFADANAED SGAGTKEYVH
101: IRVQQRNGRK SLTTVQGLKK EYIYSNILKD LKKEFCCNGT LVQSHVHVYF TARYLRTSRK SFVATVHWLQ TQ

Best Arabidopsis Sequence Match ( AT1G54290.1 )
(BLAST)

001: MSDLEVQVPT AFDPFADANA EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL KKEYSYSKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA
101: GLVKKDNIKI HGF

Arabidopsis Description

Protein translation factor SUI1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JV4]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.