Factsheet for Bra002944.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17292	Canola	cytosol	100.0	100.0
CDY19877	Canola	cytosol	29.31	100.0
Bra029001.1-P	Field mustard	cytosol	44.83	92.86
AT5G54940.3	Thale cress	cytosol, nucleus, peroxisome	43.97	91.07
VIT_19s0090g00420.t01	Wine grape	cytosol, nucleus, peroxisome	39.66	82.14
Solyc07g064620.1.1	Tomato	cytosol	39.22	81.25
KRH73751	Soybean	cytosol	38.36	78.07
KRH14395	Soybean	cytosol	38.36	78.07
PGSC0003DMT400057195	Potato	cytosol	39.66	64.34
KRH46184	Soybean	vacuole	41.38	61.15
Bra026376.1-P	Field mustard	cytosol, peroxisome, plastid	29.74	61.06
Bra010410.1-P	Field mustard	cytosol, peroxisome, plastid	28.88	59.29
Bra019068.1-P	Field mustard	cytosol, peroxisome, plastid	28.88	59.29
Bra030890.1-P	Field mustard	cytosol, peroxisome, plastid	28.88	58.26
Bra014363.1-P	Field mustard	cytosol, peroxisome, plastid	28.88	58.26
PGSC0003DMT400091273	Potato	cytosol	31.47	55.3
Solyc10g006280.1.1	Tomato	cytosol	28.45	53.66
KRG98759	Soybean	cytosol	31.9	52.48
HORVU4Hr1G010890.1	Barley	cytosol, peroxisome	12.93	50.85
Os02t0151501-00	Rice	cytosol, peroxisome	11.64	47.37
Zm00001d004854_P001	Maize	extracellular	12.93	42.25
Bra012438.1-P	Field mustard	nucleus	21.12	28.49
Zm00001d007787_P001	Maize	mitochondrion	13.36	24.8

Protein Annotations

KEGG:00290+4.2.1.33	MapMan:17.4.1.1.1	Gene3D:3.30.499.10	Gene3D:3.30.780.10	InterPro:Acnase/IPM_dHydase_lsu_aba_1/3	InterPro:Aconitase_4Fe-4S_dom
EnsemblPlantsGene:Bra002944	EnsemblPlants:Bra002944.1	EnsemblPlants:Bra002944.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR001950	InterPro:IPR015931
UniProt:M4CFG2	PFAM:PF01253	PFscan:PS50296	PANTHER:PTHR10388	PANTHER:PTHR10388:SF36	SUPFAM:SSF53732
SUPFAM:SSF55159	InterPro:SUI1	InterPro:SUI1_dom_sf	InterPro:SUI1_euk	TIGRFAMs:TIGR01160	UniParc:UPI0002544293

Description

AT5G54940 (E=9e-055) | eukaryotic translation initiation factor SUI1, putative

Coordinates

chrA10:-:6582136..6585772

Molecular Weight (calculated)

26628.2 Da

IEP (calculated)

10.212

GRAVY (calculated)

-0.569

Length

232 amino acids

Sequence
(BLAST)

001: MRDALKSLGH DPNKINPRVL VDLLFDHSDQ VYGAKPEIWG KGMQLESDRN WERFMFLKWG SSAFYNMFIN KARVLALRIR SGSVSNGYTH PHGGSSARVN
101: LMHLQYKGMR ENPKRAFQVY MVELDIQVPL AYDPFAEAQD TDAPGTKEYI HVRIQQRNGK KSLTTVQGLK KEYSYEKILK DLKKDFCCNG NVVQDKVLGK
201: IIQLQGDQRK KVSHFLVQTG IAKKDQIKIH GF

Best Arabidopsis Sequence Match ( AT5G54940.1 )
(BLAST)

001: MVELDIQIPS AYDPFAEAKD SDAPGAKENI HIRIQQRNGK KSLTTVQGLK KEYSYERILK DLKKDFCCNG NVVQDKELGK IIQLQGDQRK KVSQFLVQTG
101: IAKKDQIKIH GF

Arabidopsis Description

AT5g54940/MBG8_21 [Source:UniProtKB/TrEMBL;Acc:Q9FFT6]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.