Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- peroxisome 1
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g064620.1.1 | Tomato | cytosol | 91.07 | 91.07 |
| AT5G54940.3 | Thale cress | cytosol, nucleus, peroxisome | 86.61 | 86.61 |
| CDY43020 | Canola | cytoskeleton, cytosol, peroxisome | 85.71 | 85.71 |
| Bra029001.1-P | Field mustard | cytosol | 83.04 | 83.04 |
| KRH14395 | Soybean | cytosol | 83.93 | 82.46 |
| KRH73751 | Soybean | cytosol | 81.25 | 79.82 |
| CDY19877 | Canola | cytosol | 47.32 | 77.94 |
| PGSC0003DMT400057195 | Potato | cytosol | 91.07 | 71.33 |
| PGSC0003DMT400091273 | Potato | cytosol | 75.89 | 64.39 |
| Solyc10g006280.1.1 | Tomato | cytosol | 70.54 | 64.23 |
| KRH46184 | Soybean | vacuole | 85.71 | 61.15 |
| VIT_12s0059g02370.t01 | Wine grape | cytosol | 61.61 | 61.06 |
| CDY52575 | Canola | cytosol, peroxisome | 85.71 | 60.76 |
| HORVU4Hr1G010890.1 | Barley | cytosol, peroxisome | 29.46 | 55.93 |
| KRG98759 | Soybean | cytosol | 68.75 | 54.61 |
| Os02t0151501-00 | Rice | cytosol, peroxisome | 26.79 | 52.63 |
| VIT_19s0177g00100.t01 | Wine grape | cytosol, nucleus, peroxisome | 63.39 | 48.3 |
| Zm00001d004854_P001 | Maize | extracellular | 28.57 | 45.07 |
| Bra002944.1-P | Field mustard | cytosol | 82.14 | 39.66 |
| CDY17292 | Canola | cytosol | 82.14 | 39.66 |
| Zm00001d007787_P001 | Maize | mitochondrion | 27.68 | 24.8 |
Protein Annotations
| EntrezGene:100243506 | wikigene:100243506 | MapMan:17.4.1.1.1 | Gene3D:3.30.780.10 | ProteinID:CBI26638 | ProteinID:CBI26638.3 |
| UniProt:D7T8C6 | EMBL:FN595751 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 |
| GO:GO:0005488 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR001950 | EntrezGene:LOC100243506 | wikigene:LOC100243506 |
| PFAM:PF01253 | PIRSF:PIRSF004499 | PFscan:PS50296 | PANTHER:PTHR10388 | PANTHER:PTHR10388:SF36 | SUPFAM:SSF55159 |
| InterPro:SUI1 | InterPro:SUI1_dom_sf | InterPro:SUI1_euk | TIGR:TC54855 | TIGRFAMs:TIGR01160 | UniParc:UPI00015C799B |
| ArrayExpress:VIT_19s0090g00420 | EnsemblPlantsGene:VIT_19s0090g00420 | EnsemblPlants:VIT_19s0090g00420.t01 | unigene:Vvi.6926 | RefSeq:XP_002280065 | RefSeq:XP_002280065.1 |
Description
No Description!
Coordinates
chr19:-:6579962..6581193
Molecular Weight (calculated)
12621.3 Da
IEP (calculated)
9.735
GRAVY (calculated)
-0.558
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MVELDLQIPS AFDPFAEAKD SGAPGAKEYV HIRIQQRNGK KSLTTVQGLK KDYSYEKILK DLKKEFCCNG NVVQDKELGK VIQLQGDQRK NVSNFLVQAG
101: LVKKEQIKIH GF
101: LVKKEQIKIH GF
001: MVELDIQIPS AYDPFAEAKD SDAPGAKENI HIRIQQRNGK KSLTTVQGLK KEYSYERILK DLKKDFCCNG NVVQDKELGK IIQLQGDQRK KVSQFLVQTG
101: IAKKDQIKIH GF
101: IAKKDQIKIH GF
Arabidopsis Description
AT5g54940/MBG8_21 [Source:UniProtKB/TrEMBL;Acc:Q9FFT6]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.