Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27130.1 | CDX74635 | AT5G35750.1 | 18642946 |
| AT4G27130.1 | CDY47297 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97378 | Canola | cytosol, peroxisome, plastid | 61.62 | 53.98 |
| CDY14282 | Canola | cytosol, peroxisome, plastid | 61.62 | 53.98 |
| AT4G27130.1 | Thale cress | cytosol, peroxisome, plastid | 61.62 | 53.98 |
| CDY08224 | Canola | cytosol, peroxisome, plastid | 61.62 | 53.04 |
| CDY02466 | Canola | cytosol, peroxisome, plastid | 61.62 | 52.59 |
| CDY10602 | Canola | cytosol, peroxisome, plastid | 61.62 | 52.59 |
| Bra012438.1-P | Field mustard | nucleus | 90.91 | 52.33 |
| GSMUA_Achr9P11860_001 | Banana | cytosol | 59.6 | 52.21 |
| CDY08222 | Canola | cytosol, peroxisome, plastid | 60.61 | 52.17 |
| CDY26128 | Canola | cytosol, peroxisome, plastid | 60.61 | 52.17 |
| GSMUA_Achr2P14050_001 | Banana | cytosol | 58.59 | 51.33 |
| GSMUA_Achr4P24000_001 | Banana | cytosol | 58.59 | 51.33 |
| KRH55655 | Soybean | cytosol | 57.58 | 50.44 |
| KRH55654 | Soybean | cytosol | 57.58 | 50.44 |
| KRH25862 | Soybean | cytosol | 57.58 | 50.44 |
| PGSC0003DMT400065815 | Potato | cytosol | 57.58 | 50.44 |
| TraesCS3D01G320600.1 | Wheat | cytosol, peroxisome, plastid | 57.58 | 49.57 |
| TraesCS3A01G327200.1 | Wheat | cytosol, peroxisome, plastid | 57.58 | 49.57 |
| TraesCS3B01G356600.1 | Wheat | cytosol, peroxisome, plastid | 57.58 | 49.57 |
| Solyc10g006470.2.1 | Tomato | cytosol | 56.57 | 49.56 |
| PGSC0003DMT400037400 | Potato | cytosol | 56.57 | 49.56 |
| GSMUA_Achr8P07330_001 | Banana | cytosol, peroxisome, plastid | 56.57 | 49.56 |
| EES18447 | Sorghum | cytosol | 56.57 | 48.7 |
| EES03750 | Sorghum | cytosol, peroxisome, plastid | 56.57 | 48.7 |
| Os05t0498400-02 | Rice | cytosol | 56.57 | 48.7 |
| Os01t0794500-00 | Rice | cytosol, peroxisome, plastid | 56.57 | 48.7 |
| GSMUA_Achr1P14620_001 | Banana | cytosol, peroxisome, plastid | 55.56 | 48.67 |
| Solyc07g064150.2.1 | Tomato | cytosol | 55.56 | 48.67 |
| PGSC0003DMT400049575 | Potato | cytosol | 55.56 | 48.67 |
| Zm00001d038594_P002 | Maize | cytosol, peroxisome, plastid | 56.57 | 47.46 |
| TraesCS1A01G316900.1 | Wheat | cytosol | 54.55 | 46.96 |
| TraesCS1B01G329300.1 | Wheat | cytosol | 54.55 | 46.96 |
| TraesCS1D01G316900.1 | Wheat | cytosol | 54.55 | 46.96 |
| HORVU3Hr1G077960.2 | Barley | peroxisome, plastid | 55.56 | 44.72 |
| CDY43020 | Canola | cytoskeleton, cytosol, peroxisome | 44.44 | 39.29 |
| VIT_19s0177g00100.t01 | Wine grape | cytosol, nucleus, peroxisome | 55.56 | 37.41 |
| CDY19877 | Canola | cytosol | 25.25 | 36.76 |
| GSMUA_Achr7P03360_001 | Banana | cytosol | 25.25 | 36.23 |
| Zm00001d043217_P002 | Maize | cytosol, golgi, peroxisome | 57.58 | 35.85 |
| GSMUA_Achr4P27690_001 | Banana | cytosol | 60.61 | 34.88 |
| CDY46663 | Canola | plastid | 62.63 | 31.63 |
| CDX92777 | Canola | mitochondrion | 62.63 | 30.54 |
| CDY52575 | Canola | cytosol, peroxisome | 44.44 | 27.85 |
| GSMUA_Achr7P00190_001 | Banana | cytosol, nucleus, peroxisome, plastid | 57.58 | 25.91 |
| CDY33072 | Canola | nucleus | 34.34 | 25.56 |
| CDY17292 | Canola | cytosol | 45.45 | 19.4 |
Protein Annotations
| MapMan:17.4.1.1.1 | Gene3D:3.30.780.10 | GO:A0A078F5Q8 | UniProt:A0A078F5Q8 | EnsemblPlants:CDY08751 | ProteinID:CDY08751 |
| ProteinID:CDY08751.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 |
| GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00000681001 | InterPro:IPR001950 | PFAM:PF01253 | PFscan:PS50296 |
| PANTHER:PTHR10388 | PANTHER:PTHR10388:SF35 | SUPFAM:SSF55159 | InterPro:SUI1 | InterPro:SUI1_dom_sf | UniParc:UPI0004EEE44E |
Description
BnaA06g24730DBnaA06g24730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F5Q8]
Coordinates
chrLK031989:-:176940..177498
Molecular Weight (calculated)
11448.6 Da
IEP (calculated)
9.742
GRAVY (calculated)
-0.646
Length
99 amino acids
Sequence
(BLAST)
(BLAST)
1: MTDVNDRHPF ADANAEDSGA GTKEYVHIRV QQRNGRKSLT TVQGLKKEYI YSNILKDLKK EFCCDGTLVQ SHVHVYFTAR YLRTSRKSFV ATVHWLQTQ
001: MSDLEVQVPT AFDPFADANA EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL KKEYSYSKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA
101: GLVKKDNIKI HGF
101: GLVKKDNIKI HGF
Arabidopsis Description
Protein translation factor SUI1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JV4]
SUBAcon: [peroxisome,plastid,cytosol]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.