CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 2
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0498400-02	Rice	cytosol	97.39	97.39
TraesCS1D01G316900.1	Wheat	cytosol	96.52	96.52
TraesCS1B01G329300.1	Wheat	cytosol	96.52	96.52
TraesCS1A01G316900.1	Wheat	cytosol	96.52	96.52
EES03750	Sorghum	cytosol, peroxisome, plastid	93.91	93.91
PGSC0003DMT400037400	Potato	cytosol	89.57	91.15
VIT_12s0059g02370.t01	Wine grape	cytosol	88.7	90.27
PGSC0003DMT400049575	Potato	cytosol	88.7	90.27
Solyc10g006470.2.1	Tomato	cytosol	88.7	90.27
Solyc07g064150.2.1	Tomato	cytosol	88.7	90.27
PGSC0003DMT400065815	Potato	cytosol	87.83	89.38
GSMUA_Achr9P11860_001	Banana	cytosol	86.96	88.5
KRH25407	Soybean	cytosol, peroxisome, plastid	85.22	86.73
AT1G54290.1	Thale cress	cytosol, peroxisome, plastid	85.22	86.73
CDY08224	Canola	cytosol, peroxisome, plastid	86.09	86.09
Bra030890.1-P	Field mustard	cytosol, peroxisome, plastid	86.09	86.09
Bra014363.1-P	Field mustard	cytosol, peroxisome, plastid	86.09	86.09
CDX97378	Canola	cytosol, peroxisome, plastid	84.35	85.84
CDY14282	Canola	cytosol, peroxisome, plastid	84.35	85.84
Bra026376.1-P	Field mustard	cytosol, peroxisome, plastid	84.35	85.84
KRH25862	Soybean	cytosol	84.35	85.84
AT4G27130.1	Thale cress	cytosol, peroxisome, plastid	84.35	85.84
Zm00001d038594_P002	Maize	cytosol, peroxisome, plastid	87.83	85.59
CDY02466	Canola	cytosol, peroxisome, plastid	86.09	85.34
CDY10602	Canola	cytosol, peroxisome, plastid	86.09	85.34
Solyc03g031810.2.1	Tomato	cytosol	83.48	84.96
AT5G54760.3	Thale cress	cytosol, peroxisome, plastid	83.48	84.96
KRH56096	Soybean	cytosol, peroxisome, plastid	83.48	84.96
KRH55655	Soybean	cytosol	83.48	84.96
KRH55654	Soybean	cytosol	83.48	84.96
CDY26128	Canola	cytosol, peroxisome, plastid	84.35	84.35
CDY08222	Canola	cytosol, peroxisome, plastid	84.35	84.35
Bra019068.1-P	Field mustard	cytosol, peroxisome, plastid	82.61	84.07
Bra010410.1-P	Field mustard	cytosol, peroxisome, plastid	82.61	84.07
VIT_19s0177g00100.t01	Wine grape	cytosol, nucleus, peroxisome	88.7	69.39
CDY08751	Canola	cytosol, peroxisome, plastid	48.7	56.57
CDY46663	Canola	plastid	84.35	49.49
CDX92777	Canola	mitochondrion	84.35	47.78
PGSC0003DMT400061864	Potato	cytosol, nucleus, peroxisome	81.74	38.68
Bra012438.1-P	Field mustard	nucleus	51.3	34.3
EES12898	Sorghum	nucleus, plastid	54.78	24.14

Protein Annotations

MapMan:17.4.1.1.1	Gene3D:3.30.780.10	EntrezGene:8080061	UniProt:C5Z0D7	EnsemblPlants:EES18447	ProteinID:EES18447
ProteinID:EES18447.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR001950	PFAM:PF01253	PIRSF:PIRSF004499	PFscan:PS50296
PANTHER:PTHR10388	PANTHER:PTHR10388:SF14	EnsemblPlantsGene:SORBI_3009G185800	SUPFAM:SSF55159	InterPro:SUI1	InterPro:SUI1_dom_sf
InterPro:SUI1_euk	unigene:Sbi.18684	TIGRFAMs:TIGR01160	UniParc:UPI000151E265	RefSeq:XP_002440017.1	:

Description

hypothetical protein

Coordinates

chr9:+:53891677..53892413

Molecular Weight (calculated)

12722.2 Da

IEP (calculated)

8.728

GRAVY (calculated)

-0.518

Length

115 amino acids

Sequence
(BLAST)

001: MSDLDVQLPS AFDPFAEANA EDSGAGPGTK DYVHVRIQQR NGRKSLTTVQ GLKKEFSYNK ILKDLKKEFC CNGTVVQDPE LGQVIQLQGD QRKNVATFLV
101: QAGIAKKENI KIHGF

Best Arabidopsis Sequence Match ( AT1G54290.1 )
(BLAST)

001: MSDLEVQVPT AFDPFADANA EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL KKEYSYSKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA
101: GLVKKDNIKI HGF

Arabidopsis Description

Protein translation factor SUI1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JV4]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.