CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G107100.1	Barley	cytosol, mitochondrion, peroxisome	28.74	62.5
EES03750	Sorghum	cytosol, peroxisome, plastid	24.14	54.78
EES18447	Sorghum	cytosol	24.14	54.78
TraesCS2B01G498100.1	Wheat	plastid	35.63	39.57
TraesCS2A01G474500.1	Wheat	plastid	32.57	36.02
Os04t0627900-01	Rice	nucleus, peroxisome	30.27	32.38

Protein Annotations

MapMan:17.4.1.1.1	Gene3D:3.30.780.10	EntrezGene:8074740	UniProt:C5YGJ3	EnsemblPlants:EES12898	ProteinID:EES12898
ProteinID:EES12898.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR001950	PFAM:PF01253	PFscan:PS50296	PANTHER:PTHR10388
PANTHER:PTHR10388:SF12	EnsemblPlantsGene:SORBI_3006G224200	SUPFAM:SSF55159	InterPro:SUI1	InterPro:SUI1_dom_sf	InterPro:SUI1_euk
unigene:Sbi.19887	UniParc:UPI0001A876F0	RefSeq:XP_002448570.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:-:57029569..57031938

Molecular Weight (calculated)

26936.6 Da

IEP (calculated)

9.539

GRAVY (calculated)

-0.533

Length

261 amino acids

Sequence
(BLAST)

001: MQTTNSDNKK IPSTSSAKAQ QAAAADVSSS KLETSAVAPS SEVETKTAKK ASPPARTPGL ALEGWGLASY DSSSDEEQQG AGTVAVRAKS SEAAKKGGTS
101: KSGVGGKGKG RAPSKEKYLL PAGKKKQPAG REGEEDDKFM PGSAADGIGG GLLAPFDPFA DAELDGHDGG VAAPKDDVVH LRVQQRNGKK TLTTVQGLSA
201: AYNYARILRD LKRELCCSGV VVEDEELGSV IQLQGDHRKA VAAFLVKAGM ATKANVKVHG F

Best Arabidopsis Sequence Match ( AT5G54760.1 )
(BLAST)

001: MSELDSQVPT AFDPFADANV EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL KKEYSYTKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA
101: GLVKKDNIKI HGF

Arabidopsis Description

At5g54760 [Source:UniProtKB/TrEMBL;Acc:Q9FFV1]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.