Factsheet for GSMUA_Achr3P29130_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P11200_001	Banana	cytosol	84.36	69.53
GSMUA_Achr4P03710_001	Banana	plastid	83.89	67.82
GSMUA_Achr4P06520_001	Banana	cytosol	82.94	67.57
OQU79375	Sorghum	cytosol	38.86	59.42
GSMUA_Achr9P10620_001	Banana	cytosol, extracellular	55.92	55.4
TraesCS2D01G271700.1	Wheat	cytosol	65.4	53.91
EES09254	Sorghum	cytosol	65.4	53.08
Bra007961.1-P	Field mustard	cytosol	62.56	50.97
CDY03702	Canola	cytosol	62.56	50.97
CDY09514	Canola	cytosol	62.56	50.97
KRG90972	Soybean	cytosol	63.03	50.19
Os04t0306400-01	Rice	cytosol	65.4	50.18
VIT_01s0011g04630.t01	Wine grape	cytosol	63.51	49.81
KRH35797	Soybean	cytosol, mitochondrion	62.56	49.62
CDX77814	Canola	cytosol	62.09	49.25
PGSC0003DMT400015282	Potato	cytosol	62.09	49.25
AT1G71100.1	Thale cress	cytosol	62.09	49.06
AT2G01290.1	Thale cress	cytosol	61.14	48.68
HORVU2Hr1G066480.1	Barley	plastid	46.45	48.04
CDY40387	Canola	cytosol	60.66	47.94
Bra014328.1-P	Field mustard	cytosol	60.66	47.94
CDY37370	Canola	cytosol	60.19	47.57
PGSC0003DMT400078358	Potato	cytosol, plastid	59.72	47.01
Solyc05g008370.1.1	Tomato	cytosol	59.72	47.01
CDY17683	Canola	cytosol	62.56	45.99
Bra024892.1-P	Field mustard	cytosol	55.45	43.66
VIT_06s0004g03340.t01	Wine grape	plastid	62.56	43.42
Zm00001d052482_P001	Maize	cytosol	14.22	28.3
GSMUA_Achr9P10110_001	Banana	mitochondrion	30.81	28.02
Zm00001d030701_P001	Maize	extracellular	66.35	24.14
GSMUA_Achr8P03140_001	Banana	plasma membrane	56.4	22.62

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	Gene3D:3.30.70.260	Gene3D:3.40.50.1360	MapMan:3.9.2.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009052	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G29130_001	EnsemblPlants:GSMUA_Achr3P29130_001	EnsemblPlants:GSMUA_Achr3T29130_001	UniProt:M0SIS9
InterPro:NagB/RpiA_transferase-like	PFAM:PF06026	PANTHER:PTHR43748	PANTHER:PTHR43748:SF2	InterPro:Ribose5P_isomerase_typA	SUPFAM:SSF100950
SUPFAM:SSF75445	TIGRFAMs:TIGR00021	UniParc:UPI000295F164	SEG:seg	:	:

Description

Probable ribose-5-phosphate isomerase [Source:GMGC_GENE;Acc:GSMUA_Achr3G29130_001]

Coordinates

chr3:-:28404405..28405335

Molecular Weight (calculated)

22371.2 Da

IEP (calculated)

5.627

GRAVY (calculated)

0.330

Length

211 amino acids

Sequence
(BLAST)

001: MVLGLGTGST AVHALDRIGA LLRTGHLRDV VGIPTSEWAA ASAAAAGIPL TDLNTHPVVD LSIDGADEVD PALNLVKGRG GSLLREKMVE GASRRFVVIV
101: DESKLVPRLG VSGLAVPVEV IPFGWSLTLR RLRTLFDGSK SEPFVTDNKN YIVDLFFEDG IHGDLNLISD EILRITGVIE HGMFLGLASS VIIARKDGVV
201: VVDKAAKVNG M

Best Arabidopsis Sequence Match ( AT1G71100.1 )
(BLAST)

001: MGSAFDPLVT ATEDLAAVNS APPLSNLTQE ELKKIAAYKA VEFVESGMVI GLGTGSTAKH AVARISELLR EGKLKDIIGI PTSTTTHEQA VSLGIPLSDL
101: DSHPVVDLSI DGADEVDPAL NLVKGRGGSL LREKMIEGAS KKFVVIVDES KLVKYIGGSG LAVPVEVVPF CCDFTRGKLE ELFRDSGCVA KLRMKIGSNG
201: EEAAPAVTDN RNYVVDLYLE RDIGDLEVAS EAILRFPGVV EHGMFLGMAT TLIVAGKFGV TVKDRFG

Arabidopsis Description

RPI1Probable ribose-5-phosphate isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C998]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.