Factsheet for GSMUA_Achr4P06520_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1
plastid 5
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P29130_001	Banana	cytosol, mitochondrion	67.57	82.94
GSMUA_Achr4P11200_001	Banana	cytosol	79.54	80.47
GSMUA_Achr4P03710_001	Banana	plastid	79.54	78.93
EES09254	Sorghum	cytosol	61.78	61.54
KRH35797	Soybean	cytosol, mitochondrion	61.78	60.15
KRG90972	Soybean	cytosol	61.0	59.62
TraesCS2D01G271700.1	Wheat	cytosol	58.3	58.98
OQU79375	Sorghum	cytosol	31.27	58.7
PGSC0003DMT400015282	Potato	cytosol	59.85	58.27
Os04t0306400-01	Rice	cytosol	60.62	57.09
VIT_01s0011g04630.t01	Wine grape	cytosol	59.07	56.88
Bra007961.1-P	Field mustard	cytosol	56.76	56.76
CDY03702	Canola	cytosol	56.76	56.76
CDY09514	Canola	cytosol	56.76	56.76
CDY37370	Canola	cytosol	58.3	56.55
GSMUA_Achr9P10620_001	Banana	cytosol, extracellular	46.33	56.34
AT2G01290.1	Thale cress	cytosol	57.53	56.23
Bra014328.1-P	Field mustard	cytosol	57.53	55.81
CDY40387	Canola	cytosol	57.53	55.81
CDX77814	Canola	cytosol	57.14	55.64
PGSC0003DMT400078358	Potato	cytosol, plastid	57.14	55.22
AT1G71100.1	Thale cress	cytosol	56.76	55.06
Solyc05g008370.1.1	Tomato	cytosol	56.76	54.85
HORVU2Hr1G066480.1	Barley	plastid	39.77	50.49
VIT_06s0004g03340.t01	Wine grape	plastid	59.07	50.33
CDY17683	Canola	cytosol	55.6	50.17
Bra024892.1-P	Field mustard	cytosol	48.65	47.01
Zm00001d052482_P001	Maize	cytosol	18.92	46.23
GSMUA_Achr9P10110_001	Banana	mitochondrion	24.71	27.59
Zm00001d030701_P001	Maize	extracellular	61.78	27.59
GSMUA_Achr8P03140_001	Banana	plasma membrane	50.19	24.71

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	Gene3D:3.30.70.260	Gene3D:3.40.50.1360	MapMan:3.9.2.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009052	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G06520_001	EnsemblPlants:GSMUA_Achr4P06520_001	EnsemblPlants:GSMUA_Achr4T06520_001	UniProt:M0SLL9
HAMAP:MF_00170	InterPro:NagB/RpiA_transferase-like	PFAM:PF06026	PANTHER:PTHR43748	PANTHER:PTHR43748:SF2	InterPro:Ribose5P_isomerase_typA
InterPro:Ribose5P_isomerase_typA_subgr	SUPFAM:SSF100950	SUPFAM:SSF75445	TIGRFAMs:TIGR00021	UniParc:UPI000295CA60	SEG:seg

Description

Probable ribose-5-phosphate isomerase [Source:GMGC_GENE;Acc:GSMUA_Achr4G06520_001]

Coordinates

chr4:-:4934238..4935296

Molecular Weight (calculated)

27485.3 Da

IEP (calculated)

4.964

GRAVY (calculated)

0.227

Length

259 amino acids

Sequence
(BLAST)

001: MALPLPHLLH PAVAVAPAPP SPITAPSQDE LKRVAAHRAV EQVESGMVLG LGTGSTAAHA LDRIGDLILR GELRDIVGIP TSEWAAARAA SAGIPLTDLN
101: AHPVIDLSID GADEVDPALN LVKGRGGSLL REKMVEGASR RFVVIVDESK LVPRLGASGL AIPVEVIPFG WALTLRRLQS LFDGNWSDLD PFVTDNKNYI
201: VDLFFENGIH GDLNRISDEI LRITGVVEHG MFLGLASSVI VARTEGVVVM NKEGISNGI

Best Arabidopsis Sequence Match ( AT2G01290.1 )
(BLAST)

001: MALAYDPLFI TSDKSLSAFD VASSPPQPMN LTQDELKRIA AYKAVEFVES GMVLGLGTGS TAKHAVDRIG ELLRQGKLEN IVGIPTSKKT QEQALSLGIP
101: LSDLDAHPVI DLSIDGADEV DPFLNLVKGR GGSLLREKMI EGASKKFVVI VDDSKMVKHI GGSKLALPVE IVPFCWKFTA EKLRSLLEGY GCEANLRLGE
201: KGKAFVTDNG NYIVDMHVEE DMGDLGAVSD AILRLPGVVE HGMFLDMAST VIIAGELGVK IKNKH

Arabidopsis Description

RPI2Probable ribose-5-phosphate isomerase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.