Factsheet for GSMUA_Achr8P03140_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P12980_001
GSMUA_Achr4P20110_001
GSMUA_Achr7P05510_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04790.1	GSMUA_Achr3P12980_001	AT4G22240.1	24937144
AT3G04790.1	GSMUA_Achr4P20110_001	AT4G22240.1	24937144
AT3G04790.1	GSMUA_Achr7P05510_001	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P10620_001	Banana	cytosol, extracellular	38.4	94.84
Os07t0176900-01	Rice	plastid	38.59	72.5
TraesCS2A01G234900.1	Wheat	mitochondrion, plastid	36.5	70.59
VIT_14s0030g01900.t01	Wine grape	plastid	37.83	70.32
TraesCS6D01G061600.2	Wheat	plastid	36.88	70.29
TraesCS6B01G084400.1	Wheat	golgi	36.5	70.07
TraesCS2D01G238600.2	Wheat	mitochondrion, plastid	36.69	69.18
KRH68720	Soybean	nucleus, plastid	36.69	68.68
PGSC0003DMT400050076	Potato	cytosol, plastid	37.64	67.81
Solyc01g097460.2.1	Tomato	plastid	37.45	67.24
KRG96958	Soybean	plastid	35.55	66.55
AT3G04790.1	Thale cress	plastid	34.03	64.86
CDY50757	Canola	plastid	33.08	63.04
Bra040406.1-P	Field mustard	plastid	33.08	63.04
CDY41900	Canola	plastid	32.51	62.18
KXG34505	Sorghum	plastid	35.74	61.64
CDY30018	Canola	plastid	32.13	61.23
Bra040120.1-P	Field mustard	plastid	31.94	61.09
CDY21110	Canola	plastid	31.75	60.73
TraesCS6A01G063200.1	Wheat	plastid	33.27	58.33
GSMUA_Achr3P29130_001	Banana	cytosol, mitochondrion	22.62	56.4
GSMUA_Achr4P11200_001	Banana	cytosol	24.71	50.78
KRH44502	Soybean	plastid	17.68	50.54
GSMUA_Achr4P06520_001	Banana	cytosol	24.71	50.19
GSMUA_Achr4P03710_001	Banana	plastid	23.95	48.28
Zm00001d018936_P001	Maize	cytosol, extracellular	36.12	46.91
Solyc04g047740.1.1	Tomato	cytosol	10.65	37.58
GSMUA_Achr9P10110_001	Banana	mitochondrion	11.41	25.86

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	Gene3D:1.10.1240.40	MapMan:1.2.9	Gene3D:3.30.70.260
Gene3D:3.40.50.1360	MapMan:3.9.2.1	InterPro:Agenet-like_dom	InterPro:Agenet_dom_plant	InterPro:ENT_dom	InterPro:ENT_dom-like_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009052	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr8G03140_001	EnsemblPlants:GSMUA_Achr8P03140_001	EnsemblPlants:GSMUA_Achr8T03140_001	InterPro:IPR005491
UniProt:M0TM66	HAMAP:MF_00170	InterPro:NagB/RpiA_transferase-like	PFAM:PF03735	PFAM:PF05641	PFAM:PF06026
PFscan:PS51138	PANTHER:PTHR43748	PANTHER:PTHR43748:SF3	InterPro:Ribose5P_isomerase_typA	InterPro:Ribose5P_isomerase_typA_subgr	SMART:SM00743
SMART:SM01191	SUPFAM:SSF100950	SUPFAM:SSF158639	SUPFAM:SSF75445	TIGRFAMs:TIGR00021	UniParc:UPI000296F726
SEG:seg	:	:	:	:	:

Description

Probable ribose-5-phosphate isomerase [Source:GMGC_GENE;Acc:GSMUA_Achr8G03140_001]

Coordinates

chr8:-:2171882..2180124

Molecular Weight (calculated)

57816.8 Da

IEP (calculated)

5.515

GRAVY (calculated)

-0.259

Length

526 amino acids

Sequence
(BLAST)

001: MKFKEGDRVE VLRSKEEQYG SWFPAKITSL NGYTYTVRYE LFHSSDGKPV VETVHEGDVR PSPPPQDRRE LCLVVGGIAE VLDLCSWRVG KVMKVIKEDR
101: IVIKLFGSIQ LQEHSVSDLR VPQAWQNNQW LMIDMRNLNS HCGFSPVNLV GRTKRKRKSS TDKSNKLSTR SLPKKGFTDN HVVNSSSIPL AVTEEDIECS
201: VASCSGNEYP GYSYQNLREH RKDTALDSFD DAVSSCPIEG KEYQSKSGDE LAANVHELEL QAYQYTMQAL HASGPLSWEQ ESLLTNLRLS LNISNEEHLL
301: HLRHLAVEYV SSGMVLGLGT GSTAAFVVAE IGALLSSGKL SDIVGVPTSK RTYEQALSLG IPLSTLDAHP RIDLAIDGAD EVDPDLNLVK GRGGALLREK
401: MVEAASDKFV VVADETKLVT GLGGSGLAMP VEVVQFCWKY NQIRLQELFE GEGCEAKLRL DGNGKPYVTD NSNYIVDLYF KTPIKDATAA GKEISSFEGV
501: VEHGLFLDMA TAVIIAGKDG VTVTAK

Best Arabidopsis Sequence Match ( AT3G04790.1 )
(BLAST)

001: MASLSFVSSS HLTLRTPSIA LRSTGSSPRT SVSFSVKAQS VALSQDDLKK LAAEKAVEAI KPGMVLGLGT GSTAAFAVDQ IGKLLSSGEL YDIVGIPTSK
101: RTEEQARSLG IPLVGLDTHP RIDLAIDGAD EVDPNLDLVK GRGGALLREK MVEAVADKFI VVADDTKLVT GLGGSGLAMP VEVVQFCWNF NLIRLQDLFK
201: EFGCESKLRV DGDGKPYVTD NSNYIIDLYF KTPLKDGFAA AKEIGKFQGV VEHGLFLGMA TSVIIAGKNG VEVMTK

Arabidopsis Description

RPI3EMB3119 [Source:UniProtKB/TrEMBL;Acc:A0A178V804]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.