Factsheet for PGSC0003DMT400050076

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400043112

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04790.1	PGSC0003DMT400043112	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g097460.2.1	Tomato	plastid	95.89	95.56
GSMUA_Achr9P10620_001	Banana	cytosol, extracellular	61.64	84.51
VIT_14s0030g01900.t01	Wine grape	plastid	72.6	74.91
KRH68720	Soybean	nucleus, plastid	70.21	72.95
KRG96958	Soybean	plastid	68.49	71.17
TraesCS6B01G084400.1	Wheat	golgi	66.1	70.44
Os07t0176900-01	Rice	plastid	67.12	70.0
TraesCS2A01G234900.1	Wheat	mitochondrion, plastid	65.07	69.85
AT3G04790.1	Thale cress	plastid	65.75	69.57
TraesCS6D01G061600.2	Wheat	plastid	65.75	69.57
TraesCS2D01G238600.2	Wheat	mitochondrion, plastid	65.41	68.46
CDY30018	Canola	plastid	64.04	67.75
Bra040120.1-P	Field mustard	plastid	63.7	67.64
CDY41900	Canola	plastid	63.36	67.27
CDY21110	Canola	plastid	63.36	67.27
CDY50757	Canola	plastid	62.67	66.3
Bra040406.1-P	Field mustard	plastid	62.67	66.3
KXG34505	Sorghum	plastid	65.75	62.95
TraesCS6A01G063200.1	Wheat	plastid	59.93	58.33
PGSC0003DMT400078358	Potato	cytosol, plastid	53.42	58.21
PGSC0003DMT400015282	Potato	cytosol	52.74	57.89
KRH44502	Soybean	plastid	35.27	55.98
Zm00001d018936_P001	Maize	cytosol, extracellular	64.73	46.67
Solyc04g047740.1.1	Tomato	cytosol	22.6	44.3
GSMUA_Achr8P03140_001	Banana	plasma membrane	67.81	37.64
PGSC0003DMT400054453	Potato	plastid	22.26	20.06

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	MapMan:1.2.9	EntrezGene:102588569	Gene3D:3.30.70.260
Gene3D:3.40.50.1360	MapMan:3.9.2.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009052	GO:GO:0009987	UniProt:M1BPR5	HAMAP:MF_00170
InterPro:NagB/RpiA_transferase-like	PFAM:PF06026	EnsemblPlantsGene:PGSC0003DMG400019448	PGSC:PGSC0003DMG400019448	EnsemblPlants:PGSC0003DMT400050076	PANTHER:PTHR43748
PANTHER:PTHR43748:SF3	InterPro:Ribose5P_isomerase_typA	InterPro:Ribose5P_isomerase_typA_subgr	SUPFAM:SSF100950	SUPFAM:SSF75445	TIGRFAMs:TIGR00021
UniParc:UPI000296CA81	RefSeq:XP_006347763.1	SEG:seg	:	:	:

Description

Ribose-5-phosphate isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400019448]

Coordinates

chr1:+:75179161..75180428

Molecular Weight (calculated)

31062.4 Da

IEP (calculated)

6.371

GRAVY (calculated)

0.040

Length

292 amino acids

Sequence
(BLAST)

001: MASLSLISPH SPSSSSSTLR HSSIIGTRLP SIFLRNPTIR IRSTTPSIKA FSAPVPSPLT QDELKKLAAD KAVEYVKSGM VLGLGTGSTA AFVVAKLGEL
101: LSSGQLTNIV GVPTSKRTEE QALSLNIPLS TLDDHPHIDL AIDGADEVDP NLDLVKGRGG ALLREKMVEA ASDKFVVVVD DSKLVSGLGG SGLAMPVEVV
201: QFCWKYNLVR LQELFKEEGV DAKLRLDGNG KPYVTDNSNY IVDLYFKTPI RDSAAAGKEI ASFEGVVEHG LFLDMTTAVI IAGKEGVSVK SK

Best Arabidopsis Sequence Match ( AT3G04790.1 )
(BLAST)

001: MASLSFVSSS HLTLRTPSIA LRSTGSSPRT SVSFSVKAQS VALSQDDLKK LAAEKAVEAI KPGMVLGLGT GSTAAFAVDQ IGKLLSSGEL YDIVGIPTSK
101: RTEEQARSLG IPLVGLDTHP RIDLAIDGAD EVDPNLDLVK GRGGALLREK MVEAVADKFI VVADDTKLVT GLGGSGLAMP VEVVQFCWNF NLIRLQDLFK
201: EFGCESKLRV DGDGKPYVTD NSNYIIDLYF KTPLKDGFAA AKEIGKFQGV VEHGLFLGMA TSVIIAGKNG VEVMTK

Arabidopsis Description

RPI3EMB3119 [Source:UniProtKB/TrEMBL;Acc:A0A178V804]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.