Factsheet for Bra040120.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013602.1-P
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04790.1	Bra013602.1-P	AT4G22240.1	24937144
AT3G04790.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21110	Canola	plastid	99.64	99.64
AT3G04790.1	Thale cress	plastid	89.45	89.13
Bra040406.1-P	Field mustard	plastid	89.45	89.13
GSMUA_Achr9P10620_001	Banana	cytosol, extracellular	59.27	76.53
KRH68720	Soybean	nucleus, plastid	68.73	67.26
VIT_14s0030g01900.t01	Wine grape	plastid	68.36	66.43
Os07t0176900-01	Rice	plastid	67.27	66.07
KRG96958	Soybean	plastid	67.27	65.84
TraesCS6D01G061600.2	Wheat	plastid	65.45	65.22
TraesCS6B01G084400.1	Wheat	golgi	64.73	64.96
TraesCS2A01G234900.1	Wheat	mitochondrion, plastid	64.0	64.71
PGSC0003DMT400050076	Potato	cytosol, plastid	67.64	63.7
Solyc01g097460.2.1	Tomato	plastid	67.64	63.48
TraesCS2D01G238600.2	Wheat	mitochondrion, plastid	64.36	63.44
KXG34505	Sorghum	plastid	65.82	59.34
Bra007961.1-P	Field mustard	cytosol	53.09	56.37
TraesCS6A01G063200.1	Wheat	plastid	59.27	54.33
KRH44502	Soybean	plastid	35.64	53.26
Bra014328.1-P	Field mustard	cytosol	51.64	53.18
Bra024892.1-P	Field mustard	cytosol	45.09	46.27
Zm00001d018936_P001	Maize	cytosol, extracellular	63.27	42.96
Solyc04g047740.1.1	Tomato	cytosol	18.18	33.56
GSMUA_Achr8P03140_001	Banana	plasma membrane	61.09	31.94
Bra033747.1-P	Field mustard	plastid	24.0	23.32

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	MapMan:1.2.9	Gene3D:3.30.70.260	Gene3D:3.40.50.1360
MapMan:3.9.2.1	EnsemblPlantsGene:Bra040120	EnsemblPlants:Bra040120.1	EnsemblPlants:Bra040120.1-P	GO:GO:0003674	GO:GO:0003824
GO:GO:0004751	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009052	GO:GO:0009987
UniProt:M4FG93	HAMAP:MF_00170	InterPro:NagB/RpiA_transferase-like	PFAM:PF06026	PANTHER:PTHR43748	PANTHER:PTHR43748:SF3
InterPro:Ribose5P_isomerase_typA	InterPro:Ribose5P_isomerase_typA_subgr	SUPFAM:SSF100950	SUPFAM:SSF75445	TIGRFAMs:TIGR00021	UniParc:UPI0002544EA1
SEG:seg	:	:	:	:	:

Description

AT3G04790 (E=8e-114) | ribose 5-phosphate isomerase-related

Coordinates

chrA01:-:28372553..28373380

Molecular Weight (calculated)

29292.5 Da

IEP (calculated)

6.153

GRAVY (calculated)

0.100

Length

275 amino acids

Sequence
(BLAST)

001: MASLSFVSSS HLTLRTPSLT LRRTSPSSSS VSFSVKAQSV ALSQDDLKKL AAEKAVEAIK PGMVLGLGTG STAAFAVDQI GKLLASGELH DIVGIPTSKR
101: TEEQARSLGI PLVALDTHPR IDLAIDGADE VDPNLDLVKG RGGALLREKM VEAVAERFIV VADDTKLVKG LGGSGLAMPV EVVQFCWKFN LVRLRDLFKE
201: FGCDAKLRVG EGGEAYVTDN SNYIIDLYFK EPLKDGFAAG REIGKFEGVV EHGLFLGMAT SVIIAGKNGV EVMNK

Best Arabidopsis Sequence Match ( AT3G04790.1 )
(BLAST)

001: MASLSFVSSS HLTLRTPSIA LRSTGSSPRT SVSFSVKAQS VALSQDDLKK LAAEKAVEAI KPGMVLGLGT GSTAAFAVDQ IGKLLSSGEL YDIVGIPTSK
101: RTEEQARSLG IPLVGLDTHP RIDLAIDGAD EVDPNLDLVK GRGGALLREK MVEAVADKFI VVADDTKLVT GLGGSGLAMP VEVVQFCWNF NLIRLQDLFK
201: EFGCESKLRV DGDGKPYVTD NSNYIIDLYF KTPLKDGFAA AKEIGKFQGV VEHGLFLGMA TSVIIAGKNG VEVMTK

Arabidopsis Description

RPI3EMB3119 [Source:UniProtKB/TrEMBL;Acc:A0A178V804]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.