Factsheet for Zm00001d018936_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003470_P001
Zm00001d025574_P001
Zm00001d038652_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04790.1	Zm00001d003470_P001	AT4G22240.1	24937144
AT3G04790.1	Zm00001d025574_P001	AT4G22240.1	24937144
AT3G04790.1	Zm00001d038652_P003	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P10620_001	Banana	cytosol, extracellular	44.2	84.04
TraesCS2A01G234900.1	Wheat	mitochondrion, plastid	51.85	77.21
Os07t0176900-01	Rice	plastid	53.09	76.79
TraesCS6B01G084400.1	Wheat	golgi	51.36	75.91
TraesCS6D01G061600.2	Wheat	plastid	51.6	75.72
KXG34505	Sorghum	plastid	56.79	75.41
TraesCS2D01G238600.2	Wheat	mitochondrion, plastid	51.85	75.27
KRH68720	Soybean	nucleus, plastid	50.62	72.95
KRG96958	Soybean	plastid	49.14	70.82
VIT_14s0030g01900.t01	Wine grape	plastid	48.15	68.9
PGSC0003DMT400050076	Potato	cytosol, plastid	46.67	64.73
TraesCS6A01G063200.1	Wheat	plastid	47.65	64.33
Solyc01g097460.2.1	Tomato	plastid	46.42	64.16
CDY21110	Canola	plastid	43.21	63.64
AT3G04790.1	Thale cress	plastid	43.21	63.41
Bra040120.1-P	Field mustard	plastid	42.96	63.27
CDY30018	Canola	plastid	42.96	63.04
CDY41900	Canola	plastid	42.22	62.18
CDY50757	Canola	plastid	42.22	61.96
Bra040406.1-P	Field mustard	plastid	42.22	61.96
KRH44502	Soybean	plastid	24.2	53.26
Zm00001d052482_P001	Maize	cytosol	10.12	38.68
Solyc04g047740.1.1	Tomato	cytosol	13.33	36.24
GSMUA_Achr8P03140_001	Banana	plasma membrane	46.91	36.12
Zm00001d013135_P002	Maize	plastid	17.78	22.43
Zm00001d030701_P001	Maize	extracellular	31.85	22.24

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	MapMan:1.2.9	MapMan:16.4.1.2.5	Gene3D:3.30.70.260
Gene3D:3.40.50.1360	MapMan:3.9.2.1	UniProt:A0A1D6HTG4	GO:GO:0003674	GO:GO:0003824	GO:GO:0004751
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009052	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009570	GO:GO:0009579	GO:GO:0009605	GO:GO:0009607	GO:GO:0009719	GO:GO:0009735
GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0016853	GO:GO:0042742	HAMAP:MF_00170
InterPro:NagB/RpiA_transferase-like	ProteinID:ONM51679.1	PFAM:PF03660	PFAM:PF06026	InterPro:PHF5	PANTHER:PTHR43748
PANTHER:PTHR43748:SF3	InterPro:Ribose5P_isomerase_typA	InterPro:Ribose5P_isomerase_typA_subgr	SUPFAM:SSF100950	SUPFAM:SSF75445	TIGRFAMs:TIGR00021
UniParc:UPI0008454C0A	EnsemblPlantsGene:Zm00001d018936	EnsemblPlants:Zm00001d018936_P001	EnsemblPlants:Zm00001d018936_T001	SEG:seg	:

Description

Probable ribose-5-phosphate isomerase 3 chloroplastic

Coordinates

chr7:-:9658900..9661440

Molecular Weight (calculated)

43504.9 Da

IEP (calculated)

8.193

GRAVY (calculated)

-0.031

Length

405 amino acids

Sequence
(BLAST)

001: MAKHHPDLIM CRKQPGIAIG RLCEKCDGKC VVCDSYVRPC TLVRVCDECN YGSFQGRCVI CGGVGISDAY YCKECTQQEK DRDGCPKIVN LGSAKTDLFY
101: ERKKYGFKKR KFSVDRLKLE TPPLPPPTRA PMAATAISVR LHPTAARHVA SARRARLGAV RAQSAPAAAA AALTQDDLKR LAAVRAVEQV KSGMVLGLGT
201: GSTAAFAVAE IGALLAAGKL EKIVGVPTSK RTFEQAQSLG IPLSTLDDNP LIDLAIDGAD EVDPDLNLVK GRGGALLREK MVEAASDKFI VIVDETKLVD
301: GLGGSGLAMP VEVVQFCWKY NLVRLQELFK EEGVEAKLRF EGDKPYVTDN SNYIVDLYFK TPIKDALAAG QEIAALEGVV DHGLFLNMAS SVIIAGTDGV
401: SVKTK

Best Arabidopsis Sequence Match ( AT3G04790.1 )
(BLAST)

001: MASLSFVSSS HLTLRTPSIA LRSTGSSPRT SVSFSVKAQS VALSQDDLKK LAAEKAVEAI KPGMVLGLGT GSTAAFAVDQ IGKLLSSGEL YDIVGIPTSK
101: RTEEQARSLG IPLVGLDTHP RIDLAIDGAD EVDPNLDLVK GRGGALLREK MVEAVADKFI VVADDTKLVT GLGGSGLAMP VEVVQFCWNF NLIRLQDLFK
201: EFGCESKLRV DGDGKPYVTD NSNYIIDLYF KTPLKDGFAA AKEIGKFQGV VEHGLFLGMA TSVIIAGKNG VEVMTK

Arabidopsis Description

RPI3EMB3119 [Source:UniProtKB/TrEMBL;Acc:A0A178V804]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.