Factsheet for Solyc01g097460.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g081170.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04790.1	Solyc02g081170.2.1	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050076	Potato	cytosol, plastid	95.56	95.89
GSMUA_Achr9P10620_001	Banana	cytosol, extracellular	61.43	84.51
VIT_14s0030g01900.t01	Wine grape	plastid	72.35	74.91
KRH68720	Soybean	nucleus, plastid	69.97	72.95
KRG96958	Soybean	plastid	68.26	71.17
TraesCS6B01G084400.1	Wheat	golgi	65.87	70.44
Os07t0176900-01	Rice	plastid	66.89	70.0
TraesCS2A01G234900.1	Wheat	mitochondrion, plastid	64.85	69.85
TraesCS6D01G061600.2	Wheat	plastid	65.53	69.57
AT3G04790.1	Thale cress	plastid	65.53	69.57
TraesCS2D01G238600.2	Wheat	mitochondrion, plastid	65.19	68.46
CDY30018	Canola	plastid	63.82	67.75
Bra040120.1-P	Field mustard	plastid	63.48	67.64
CDY41900	Canola	plastid	63.14	67.27
CDY21110	Canola	plastid	63.14	67.27
CDY50757	Canola	plastid	62.46	66.3
Bra040406.1-P	Field mustard	plastid	62.46	66.3
KXG34505	Sorghum	plastid	65.53	62.95
Solyc05g008370.1.1	Tomato	cytosol	53.58	58.58
TraesCS6A01G063200.1	Wheat	plastid	59.73	58.33
KRH44502	Soybean	plastid	35.15	55.98
Zm00001d018936_P001	Maize	cytosol, extracellular	64.16	46.42
Solyc04g047740.1.1	Tomato	cytosol	22.53	44.3
GSMUA_Achr8P03140_001	Banana	plasma membrane	67.24	37.45
Solyc02g069620.2.1	Tomato	plastid	23.89	23.65

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	MapMan:1.2.9	Gene3D:3.30.70.260	Gene3D:3.40.50.1360
MapMan:3.9.2.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009052	GO:GO:0009987	UniProt:K4B0D3	HAMAP:MF_00170	InterPro:NagB/RpiA_transferase-like
PFAM:PF06026	PANTHER:PTHR43748	PANTHER:PTHR43748:SF3	InterPro:Ribose5P_isomerase_typA	InterPro:Ribose5P_isomerase_typA_subgr	SUPFAM:SSF100950
SUPFAM:SSF75445	EnsemblPlantsGene:Solyc01g097460.2	EnsemblPlants:Solyc01g097460.2.1	TIGRFAMs:TIGR00021	UniParc:UPI0001CAC88C	SEG:seg

Description

No Description!

Coordinates

chr1:+:88306837..88314043

Molecular Weight (calculated)

31149.5 Da

IEP (calculated)

6.371

GRAVY (calculated)

0.037

Length

293 amino acids

Sequence
(BLAST)

001: MASLSLISPH SPSSSSSSTL RHSSIIGTRL PSIFLRNPTI RIRSTTPSIK AFSAPVPSPL TQDELKKLAA DKAVEYVKSG MVLGLGTGST AAFVVAKLGE
101: LLSSGQLTNI VGVPTSKRTE EQALSLNIPL STLDDHPHID LAIDGADEVD PNLDLVKGRG GALLREKMVE AASDKFVVVV DDSKLVSGLG GSGLAMPVEV
201: VQFCWKYNLV RLQELFKEEG VDAKLRLDGN GKPYVTDNSN YIVDLYFKTP IRDSAAAGKE IASFEGVVEH GLFLDMTTAV IIAGKEGVSV KSK

Best Arabidopsis Sequence Match ( AT3G04790.1 )
(BLAST)

001: MASLSFVSSS HLTLRTPSIA LRSTGSSPRT SVSFSVKAQS VALSQDDLKK LAAEKAVEAI KPGMVLGLGT GSTAAFAVDQ IGKLLSSGEL YDIVGIPTSK
101: RTEEQARSLG IPLVGLDTHP RIDLAIDGAD EVDPNLDLVK GRGGALLREK MVEAVADKFI VVADDTKLVT GLGGSGLAMP VEVVQFCWNF NLIRLQDLFK
201: EFGCESKLRV DGDGKPYVTD NSNYIIDLYF KTPLKDGFAA AKEIGKFQGV VEHGLFLGMA TSVIIAGKNG VEVMTK

Arabidopsis Description

RPI3EMB3119 [Source:UniProtKB/TrEMBL;Acc:A0A178V804]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.