Factsheet for TraesCS2D01G238600.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS5A01G164600.1
TraesCS5B01G162100.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04790.1	TraesCS5A01G164600.1	AT4G22240.1	24937144
AT3G04790.1	TraesCS5B01G162100.1	AT4G22240.1	24937144
AT3G04790.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT3G04790.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT3G04790.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT3G04790.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT3G04790.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT3G04790.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G234900.1	Wheat	mitochondrion, plastid	96.77	99.26
TraesCS6D01G061600.2	Wheat	plastid	92.83	93.84
GSMUA_Achr9P10620_001	Banana	cytosol, extracellular	67.38	88.26
Os07t0176900-01	Rice	plastid	83.51	83.21
KXG34505	Sorghum	plastid	82.44	75.41
KRH68720	Soybean	nucleus, plastid	72.76	72.24
VIT_14s0030g01900.t01	Wine grape	plastid	72.04	71.02
KRG96958	Soybean	plastid	70.25	69.75
PGSC0003DMT400050076	Potato	cytosol, plastid	68.46	65.41
AT3G04790.1	Thale cress	plastid	64.52	65.22
Solyc01g097460.2.1	Tomato	plastid	68.46	65.19
CDY21110	Canola	plastid	63.8	64.73
Bra040120.1-P	Field mustard	plastid	63.44	64.36
CDY30018	Canola	plastid	63.44	64.13
CDY41900	Canola	plastid	63.08	64.0
CDY50757	Canola	plastid	63.08	63.77
Bra040406.1-P	Field mustard	plastid	63.08	63.77
KRH44502	Soybean	plastid	35.13	53.26
Zm00001d018936_P001	Maize	cytosol, extracellular	75.27	51.85
TraesCS2D01G271700.1	Wheat	cytosol	44.09	48.05
GSMUA_Achr8P03140_001	Banana	plasma membrane	69.18	36.69
Solyc04g047740.1.1	Tomato	cytosol	19.0	35.57
TraesCS5D01G424700.1	Wheat	plastid	27.96	26.09
TraesCS5D01G424600.1	Wheat	mitochondrion	8.24	20.0
TraesCS2D01G492300.1	Wheat	cytosol	7.17	18.18
TraesCS7D01G377100.1	Wheat	cytosol	7.17	18.18

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	MapMan:1.2.9	Gene3D:3.30.70.260	Gene3D:3.40.50.1360
MapMan:3.9.2.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009052	GO:GO:0009987	HAMAP:MF_00170	InterPro:NagB/RpiA_transferase-like	PFAM:PF06026
PANTHER:PTHR43748	PANTHER:PTHR43748:SF3	InterPro:Ribose5P_isomerase_typA	InterPro:Ribose5P_isomerase_typA_subgr	SUPFAM:SSF100950	SUPFAM:SSF75445
TIGRFAMs:TIGR00021	EnsemblPlantsGene:TraesCS2D01G238600	EnsemblPlants:TraesCS2D01G238600.2	TIGR:cd01398	SEG:seg	:

Description

No Description!

Coordinates

chr2D:-:248776869..248778300

Molecular Weight (calculated)

29251.2 Da

IEP (calculated)

5.743

GRAVY (calculated)

0.103

Length

279 amino acids

Sequence
(BLAST)

001: MAAAATAVRF HTAAARRAAP RRPARFAVRA DAAQAATALT QDDLKRLAAV RAVEQVQSGM VLGLGTGSTA AFAVAEIGAL LANGKLSGIV GVPTSKRTFE
101: QAMSLGIPLS TLDDHPVIDL AIDGADEDCQ HSESVDPDLN LVKGRGGALL REKMVEAASG KFVVVVDETK LVTGLGGSGL AMPVEVVQFC WKYNQVRLQG
201: LFNEEGCEAK LRLNEDGKPY VTDNSNYIVD LYFKTPIKDA LGAGKEIAAL EGVVEHGLFL NMASSVIIAG SDGVSVKTK

Best Arabidopsis Sequence Match ( AT3G04790.1 )
(BLAST)

001: MASLSFVSSS HLTLRTPSIA LRSTGSSPRT SVSFSVKAQS VALSQDDLKK LAAEKAVEAI KPGMVLGLGT GSTAAFAVDQ IGKLLSSGEL YDIVGIPTSK
101: RTEEQARSLG IPLVGLDTHP RIDLAIDGAD EVDPNLDLVK GRGGALLREK MVEAVADKFI VVADDTKLVT GLGGSGLAMP VEVVQFCWNF NLIRLQDLFK
201: EFGCESKLRV DGDGKPYVTD NSNYIIDLYF KTPLKDGFAA AKEIGKFQGV VEHGLFLGMA TSVIIAGKNG VEVMTK

Arabidopsis Description

RPI3EMB3119 [Source:UniProtKB/TrEMBL;Acc:A0A178V804]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.