Factsheet for GSMUA_Achr9P10620_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 4
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P12980_001
GSMUA_Achr4P20110_001
GSMUA_Achr7P05510_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04790.1	GSMUA_Achr3P12980_001	AT4G22240.1	24937144
AT3G04790.1	GSMUA_Achr4P20110_001	AT4G22240.1	24937144
AT3G04790.1	GSMUA_Achr7P05510_001	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0176900-01	Rice	plastid	91.55	69.64
TraesCS6D01G061600.2	Wheat	plastid	88.73	68.48
TraesCS2A01G234900.1	Wheat	mitochondrion, plastid	87.32	68.38
TraesCS6B01G084400.1	Wheat	golgi	87.79	68.25
TraesCS2D01G238600.2	Wheat	mitochondrion, plastid	88.26	67.38
VIT_14s0030g01900.t01	Wine grape	plastid	88.73	66.78
KRH68720	Soybean	nucleus, plastid	86.85	65.84
KRG96958	Soybean	plastid	84.04	63.7
PGSC0003DMT400050076	Potato	cytosol, plastid	84.51	61.64
AT3G04790.1	Thale cress	plastid	79.81	61.59
Solyc01g097460.2.1	Tomato	plastid	84.51	61.43
KXG34505	Sorghum	plastid	85.92	60.0
CDY30018	Canola	plastid	77.46	59.78
CDY21110	Canola	plastid	77.0	59.64
Bra040120.1-P	Field mustard	plastid	76.53	59.27
CDY41900	Canola	plastid	76.53	59.27
CDY50757	Canola	plastid	76.53	59.06
Bra040406.1-P	Field mustard	plastid	76.53	59.06
TraesCS6A01G063200.1	Wheat	plastid	79.81	56.67
GSMUA_Achr3P29130_001	Banana	cytosol, mitochondrion	55.4	55.92
GSMUA_Achr4P11200_001	Banana	cytosol	55.87	46.48
GSMUA_Achr4P06520_001	Banana	cytosol	56.34	46.33
GSMUA_Achr4P03710_001	Banana	plastid	55.87	45.59
KRH44502	Soybean	plastid	38.97	45.11
Zm00001d018936_P001	Maize	cytosol, extracellular	84.04	44.2
GSMUA_Achr8P03140_001	Banana	plasma membrane	94.84	38.4
Solyc04g047740.1.1	Tomato	cytosol	24.88	35.57
GSMUA_Achr9P10110_001	Banana	mitochondrion	27.7	25.43

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	MapMan:1.2.9	Gene3D:3.30.70.260	Gene3D:3.40.50.1360
MapMan:3.9.2.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009052	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr9G10620_001	EnsemblPlants:GSMUA_Achr9P10620_001	EnsemblPlants:GSMUA_Achr9T10620_001
UniProt:M0TZ71	InterPro:NagB/RpiA_transferase-like	PFAM:PF06026	PANTHER:PTHR43748	PANTHER:PTHR43748:SF3	InterPro:Ribose5P_isomerase_typA
SUPFAM:SSF100950	SUPFAM:SSF75445	TIGRFAMs:TIGR00021	UniParc:UPI00029543D0	:	:

Description

Probable ribose-5-phosphate isomerase [Source:GMGC_GENE;Acc:GSMUA_Achr9G10620_001]

Coordinates

chr9:-:6921338..6923561

Molecular Weight (calculated)

22560.2 Da

IEP (calculated)

4.462

GRAVY (calculated)

0.090

Length

213 amino acids

Sequence
(BLAST)

001: MVLGLGTGST AAFVVAEIGA LLSSGKLSDI VGVPTSKRTY EQALSLGIPL STLDDHPRID LAIDGADEVD PDLNLVKGRG GALLREKMVE AASDKFVVVA
101: DETKLVTGLG GSGLAMPVEV VQFCWKYNQT RLQELFKEEG CEAKLRLDDG GKPYVTDNSN YIVDLYFKTP IKDAPAAGKE ISALEGVVEH GLFLDMATAV
201: IIAGKDGVTM TTK

Best Arabidopsis Sequence Match ( AT3G04790.1 )
(BLAST)

001: MASLSFVSSS HLTLRTPSIA LRSTGSSPRT SVSFSVKAQS VALSQDDLKK LAAEKAVEAI KPGMVLGLGT GSTAAFAVDQ IGKLLSSGEL YDIVGIPTSK
101: RTEEQARSLG IPLVGLDTHP RIDLAIDGAD EVDPNLDLVK GRGGALLREK MVEAVADKFI VVADDTKLVT GLGGSGLAMP VEVVQFCWNF NLIRLQDLFK
201: EFGCESKLRV DGDGKPYVTD NSNYIIDLYF KTPLKDGFAA AKEIGKFQGV VEHGLFLGMA TSVIIAGKNG VEVMTK

Arabidopsis Description

RPI3EMB3119 [Source:UniProtKB/TrEMBL;Acc:A0A178V804]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.