CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79139
CDX82925
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04790.1	CDX79139	AT4G22240.1	24937144
AT3G04790.1	CDX82925	AT4G22240.1	24937144
AT3G04790.1	CDY32970	AT5G42980.1	15352244
AT3G04790.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21110	Canola	plastid	94.91	94.91
CDY30018	Canola	plastid	94.91	94.57
Bra040406.1-P	Field mustard	plastid	93.45	93.12
CDY50757	Canola	plastid	93.45	93.12
AT3G04790.1	Thale cress	plastid	88.73	88.41
GSMUA_Achr9P10620_001	Banana	cytosol, extracellular	59.27	76.53
KRH68720	Soybean	nucleus, plastid	68.73	67.26
VIT_14s0030g01900.t01	Wine grape	plastid	68.0	66.08
KRG96958	Soybean	plastid	67.27	65.84
Os07t0176900-01	Rice	plastid	66.55	65.36
TraesCS6D01G061600.2	Wheat	plastid	65.09	64.86
TraesCS6B01G084400.1	Wheat	golgi	64.36	64.6
TraesCS2A01G234900.1	Wheat	mitochondrion, plastid	63.64	64.34
PGSC0003DMT400050076	Potato	cytosol, plastid	67.27	63.36
Solyc01g097460.2.1	Tomato	plastid	67.27	63.14
TraesCS2D01G238600.2	Wheat	mitochondrion, plastid	64.0	63.08
KXG34505	Sorghum	plastid	65.45	59.02
CDY09514	Canola	cytosol	53.45	56.76
CDY03702	Canola	cytosol	52.73	55.98
KRH44502	Soybean	plastid	36.0	53.8
TraesCS6A01G063200.1	Wheat	plastid	58.18	53.33
CDX77814	Canola	cytosol	51.27	53.01
CDY40387	Canola	cytosol	51.27	52.81
CDY37370	Canola	cytosol	50.55	52.06
CDY17683	Canola	cytosol	50.55	48.43
Zm00001d018936_P001	Maize	cytosol, extracellular	62.18	42.22
GSMUA_Achr8P03140_001	Banana	plasma membrane	62.18	32.51
Solyc04g047740.1.1	Tomato	cytosol	17.45	32.21
CDY49016	Canola	plastid	24.0	23.32
CDY49497	Canola	plastid	23.27	21.84
CDY21109	Canola	cytosol	13.09	13.79
CDY66019	Canola	cytosol	5.45	13.64
CDY29709	Canola	cytosol	5.45	13.64
CDY10254	Canola	cytosol	5.45	13.64
CDY06683	Canola	cytosol	5.45	13.64
CDX96931	Canola	cytosol	5.45	13.64

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	MapMan:1.2.9	Gene3D:3.30.70.260	Gene3D:3.40.50.1360
MapMan:3.9.2.1	GO:A0A078HTJ5	UniProt:A0A078HTJ5	EnsemblPlants:CDY41900	ProteinID:CDY41900	ProteinID:CDY41900.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009052	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00073878001	HAMAP:MF_00170	InterPro:NagB/RpiA_transferase-like	PFAM:PF06026
PANTHER:PTHR43748	PANTHER:PTHR43748:SF3	MetaCyc:PWY-1861	MetaCyc:PWY-5723	InterPro:Ribose5P_isomerase_typA	InterPro:Ribose5P_isomerase_typA_subgr
SUPFAM:SSF100950	SUPFAM:SSF75445	TIGRFAMs:TIGR00021	UniPathway:UPA00115	UniParc:UPI0004EE787E	SEG:seg

Description

BnaC05g47040DBnaC05g47040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTJ5]

Coordinates

chrLK032510:+:62460..63287

Molecular Weight (calculated)

29285.4 Da

IEP (calculated)

6.153

GRAVY (calculated)

0.072

Length

275 amino acids

Sequence
(BLAST)

001: MASLSFVSSS HLTLRAPSPN LRSSSPRPTS VSFSVKAQSV ALSQDDLKKL AAEKAVESIK PGMVLGLGTG STAAFAVDQI GKLLSSGELH DIVGIPTSKR
101: TEDQARSLGI PLVALDTHPR IDLAIDGADE VDPNLDLVKG RGGALLREKM VEAVAERFIV VADDTKLVKG LGGSGLAMPV EVVQFCWKFN LVRLRDLFKE
201: FGCEAKLRVG EGGEAYVTDN SNFIIDLYFK EPLKDGFAAG REIGKFEGVV EHGLFLGMAT SVIIAGKNGV EVMNK

Best Arabidopsis Sequence Match ( AT3G04790.1 )
(BLAST)

001: MASLSFVSSS HLTLRTPSIA LRSTGSSPRT SVSFSVKAQS VALSQDDLKK LAAEKAVEAI KPGMVLGLGT GSTAAFAVDQ IGKLLSSGEL YDIVGIPTSK
101: RTEEQARSLG IPLVGLDTHP RIDLAIDGAD EVDPNLDLVK GRGGALLREK MVEAVADKFI VVADDTKLVT GLGGSGLAMP VEVVQFCWNF NLIRLQDLFK
201: EFGCESKLRV DGDGKPYVTD NSNYIIDLYF KTPLKDGFAA AKEIGKFQGV VEHGLFLGMA TSVIIAGKNG VEVMTK

Arabidopsis Description

RPI3EMB3119 [Source:UniProtKB/TrEMBL;Acc:A0A178V804]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.