CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03702	Canola	cytosol	14.56	14.67
CDY09514	Canola	cytosol	14.18	14.29
CDY37370	Canola	cytosol	13.79	13.48
CDY40387	Canola	cytosol	13.79	13.48
CDY21110	Canola	plastid	13.79	13.09
CDY41900	Canola	plastid	13.79	13.09
CDY50757	Canola	plastid	13.79	13.04
CDY30018	Canola	plastid	13.79	13.04
CDX77814	Canola	cytosol	12.64	12.41
CDY17683	Canola	cytosol	13.03	11.85
CDX96931	Canola	cytosol	4.21	10.0
CDY66019	Canola	cytosol	4.21	10.0
CDY29709	Canola	cytosol	4.21	10.0
CDY10254	Canola	cytosol	4.21	10.0
CDY06683	Canola	cytosol	4.21	10.0
CDY49016	Canola	plastid	9.58	8.83
TraesCS5D01G424600.1	Wheat	mitochondrion	3.83	8.7
CDY49497	Canola	plastid	9.2	8.19

Protein Annotations

MapMan:17.1.3.1.4	GO:A0A078G6S8	UniProt:A0A078G6S8	EnsemblPlants:CDY21109	ProteinID:CDY21109	ProteinID:CDY21109.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00015287001
HAMAP:MF_03122	PFAM:PF01015	ScanProsite:PS01191	PANTHER:PTHR11830	PANTHER:PTHR11830:SF12	InterPro:Ribosomal_S1/3_euk
InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS	SMART:SM01397	UniParc:UPI0004EF0A25	SEG:seg	:

Description

BnaA01g33400D40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A078G6S8]

Coordinates

chrLK032116:-:31846..33552

Molecular Weight (calculated)

29838.2 Da

IEP (calculated)

10.427

GRAVY (calculated)

-0.566

Length

261 amino acids

Sequence
(BLAST)

001: MAVGKNKRIS KGRKGGKKKI VDPFSKKDWY DIKAPSSFTH RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLNKDEDQA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IESHVDVKTT DNYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRSKMRE IMIKEASSCD LKELVAKFIP ESIGKDIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE VVEEPTEIIG A

Best Arabidopsis Sequence Match ( AT3G04840.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPSIFTH RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDNA YRKIRLRAED VQGRNVLCQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMRD IMVREASSCD LKDLVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLMD VHGDYSAEDV GVKVDRPADE MAVEEPTEII GA

Arabidopsis Description

RPS3AA40S ribosomal protein S3a-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.