CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79139
CDX82925
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04790.1	CDX79139	AT4G22240.1	24937144
AT3G04790.1	CDX82925	AT4G22240.1	24937144
AT3G04790.1	CDY32970	AT5G42980.1	15352244
AT3G04790.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21110	Canola	plastid	96.74	97.09
CDY41900	Canola	plastid	94.57	94.91
CDY50757	Canola	plastid	90.58	90.58
AT3G04790.1	Thale cress	plastid	87.68	87.68
GSMUA_Achr9P10620_001	Banana	cytosol, extracellular	59.78	77.46
KRH68720	Soybean	nucleus, plastid	67.75	66.55
Os07t0176900-01	Rice	plastid	67.03	66.07
VIT_14s0030g01900.t01	Wine grape	plastid	67.03	65.37
KRG96958	Soybean	plastid	66.3	65.12
TraesCS6D01G061600.2	Wheat	plastid	64.86	64.86
TraesCS2A01G234900.1	Wheat	mitochondrion, plastid	63.77	64.71
TraesCS6B01G084400.1	Wheat	golgi	64.13	64.6
PGSC0003DMT400050076	Potato	cytosol, plastid	67.75	64.04
Solyc01g097460.2.1	Tomato	plastid	67.75	63.82
TraesCS2D01G238600.2	Wheat	mitochondrion, plastid	64.13	63.44
KXG34505	Sorghum	plastid	65.22	59.02
CDY09514	Canola	cytosol	53.26	56.76
CDY03702	Canola	cytosol	53.26	56.76
TraesCS6A01G063200.1	Wheat	plastid	59.06	54.33
CDX77814	Canola	cytosol	51.45	53.38
CDY40387	Canola	cytosol	51.45	53.18
CDY37370	Canola	cytosol	50.72	52.43
KRH44502	Soybean	plastid	34.42	51.63
CDY17683	Canola	cytosol	50.72	48.78
Zm00001d018936_P001	Maize	cytosol, extracellular	63.04	42.96
Solyc04g047740.1.1	Tomato	cytosol	17.75	32.89
GSMUA_Achr8P03140_001	Banana	plasma membrane	61.23	32.13
CDY49016	Canola	plastid	23.55	22.97
CDY49497	Canola	plastid	22.83	21.5
CDY21109	Canola	cytosol	13.04	13.79
CDY66019	Canola	cytosol	5.43	13.64
CDY29709	Canola	cytosol	5.43	13.64
CDY10254	Canola	cytosol	5.43	13.64
CDY06683	Canola	cytosol	5.43	13.64
CDX96931	Canola	cytosol	5.43	13.64

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	MapMan:1.2.9	Gene3D:3.30.70.260	Gene3D:3.40.50.1360
MapMan:3.9.2.1	GO:A0A078GZL3	UniProt:A0A078GZL3	EnsemblPlants:CDY30018	ProteinID:CDY30018	ProteinID:CDY30018.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009052	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00044553001	HAMAP:MF_00170	InterPro:NagB/RpiA_transferase-like	PFAM:PF06026
PANTHER:PTHR43748	PANTHER:PTHR43748:SF3	MetaCyc:PWY-1861	MetaCyc:PWY-5723	InterPro:Ribose5P_isomerase_typA	InterPro:Ribose5P_isomerase_typA_subgr
SUPFAM:SSF100950	SUPFAM:SSF75445	TIGRFAMs:TIGR00021	UniPathway:UPA00115	UniParc:UPI000182B391	SEG:seg

Description

BnaC01g39900DBnaC01g39900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZL3]

Coordinates

chrLK032247:+:465096..466212

Molecular Weight (calculated)

29438.8 Da

IEP (calculated)

6.533

GRAVY (calculated)

0.093

Length

276 amino acids

Sequence
(BLAST)

001: MASSLSFVSS SHLTLRTPSL TLRKLSPPRT SVSFSVKAQS VALSQDDLKK LAAEKAVEAI KPGMVLGLGT GSTAAFAVDQ IGKLLSSGEL HDIVGIPTSK
101: RTEEQARSLG IPLVALDTHP RIDLAIDGAD EVDPNLDLVK GRGGALLREK MVEAVAERFI VVADDTKLVK GLGGSGLAMP VEVVQFCWKF NLVRLRDLFK
201: EFGCDAKLRV GEGGEAYVTD NSNYIIDLYF KEPLKDGFAA GREIGKLEGV VEHGLFLGMA TSVIIAGKNG VEVMNK

Best Arabidopsis Sequence Match ( AT3G04790.1 )
(BLAST)

001: MASLSFVSSS HLTLRTPSIA LRSTGSSPRT SVSFSVKAQS VALSQDDLKK LAAEKAVEAI KPGMVLGLGT GSTAAFAVDQ IGKLLSSGEL YDIVGIPTSK
101: RTEEQARSLG IPLVGLDTHP RIDLAIDGAD EVDPNLDLVK GRGGALLREK MVEAVADKFI VVADDTKLVT GLGGSGLAMP VEVVQFCWNF NLIRLQDLFK
201: EFGCESKLRV DGDGKPYVTD NSNYIIDLYF KTPLKDGFAA AKEIGKFQGV VEHGLFLGMA TSVIIAGKNG VEVMTK

Arabidopsis Description

RPI3EMB3119 [Source:UniProtKB/TrEMBL;Acc:A0A178V804]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.