Factsheet for TraesCS6A01G063200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS5A01G164600.1
TraesCS5B01G162100.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04790.1	TraesCS5A01G164600.1	AT4G22240.1	24937144
AT3G04790.1	TraesCS5B01G162100.1	AT4G22240.1	24937144
AT3G04790.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT3G04790.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT3G04790.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT3G04790.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT3G04790.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT3G04790.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G084400.1	Wheat	golgi	74.33	81.39
TraesCS2A01G234900.1	Wheat	mitochondrion, plastid	73.33	80.88
TraesCS6D01G061600.2	Wheat	plastid	74.33	80.8
GSMUA_Achr9P10620_001	Banana	cytosol, extracellular	56.67	79.81
Os07t0176900-01	Rice	plastid	70.0	75.0
KRH68720	Soybean	nucleus, plastid	63.67	67.97
VIT_14s0030g01900.t01	Wine grape	plastid	62.0	65.72
KXG34505	Sorghum	plastid	66.67	65.57
KRG96958	Soybean	plastid	61.33	65.48
PGSC0003DMT400050076	Potato	cytosol, plastid	58.33	59.93
AT3G04790.1	Thale cress	plastid	55.0	59.78
Solyc01g097460.2.1	Tomato	plastid	58.33	59.73
CDY21110	Canola	plastid	54.67	59.64
Bra040120.1-P	Field mustard	plastid	54.33	59.27
CDY30018	Canola	plastid	54.33	59.06
CDY50757	Canola	plastid	53.67	58.33
Bra040406.1-P	Field mustard	plastid	53.67	58.33
CDY41900	Canola	plastid	53.33	58.18
KRH44502	Soybean	plastid	30.33	49.46
Zm00001d018936_P001	Maize	cytosol, extracellular	64.33	47.65
Solyc04g047740.1.1	Tomato	cytosol	17.67	35.57
GSMUA_Achr8P03140_001	Banana	plasma membrane	58.33	33.27
TraesCS5A01G417000.1	Wheat	plastid	22.67	22.9
TraesCS2A01G492100.1	Wheat	cytosol	7.0	19.09
TraesCS7A01G380700.1	Wheat	cytosol	7.0	19.09

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	Gene3D:3.30.70.260	Gene3D:3.40.50.1360	MapMan:50.5.3
GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009052	GO:GO:0009987	InterPro:NagB/RpiA_transferase-like	PFAM:PF06026	PANTHER:PTHR43748	PANTHER:PTHR43748:SF3
InterPro:Ribose5P_isomerase_typA	SUPFAM:SSF100950	SUPFAM:SSF75445	TIGRFAMs:TIGR00021	EnsemblPlantsGene:TraesCS6A01G063200	EnsemblPlants:TraesCS6A01G063200.1
TIGR:cd01398	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:33952629..33953613

Molecular Weight (calculated)

31939.9 Da

IEP (calculated)

10.991

GRAVY (calculated)

-0.013

Length

300 amino acids

Sequence
(BLAST)

001: MAAAATATAT AVRLHAAATR RAAPRRPARL AVRADAARAA TALTQDDLKR LAAVRAVEQV QSGMVLGLGT GSTAAFAVAE IGALLASGKL SGIVGVPTSK
101: RTFEQAARDP ALHARRPPRH RPRHRRRRRG PLLPLPSPLT FSLHRTILVL TTLTEVDPDL NLVKGRGGAL LREKMVEAAS GKFVVVVDET KLVTGLGGSG
201: LAMPVEVVQF CWKHNQVRLQ GLFNEEGCEA KLRLNEDGKP YVTDNSNYIV DLYFKTPIRD ALGAGKEIAA LEGVVEHGLF LNMATSVIIA GSDGVSVKTK

Best Arabidopsis Sequence Match ( AT1G71100.1 )
(BLAST)

001: MGSAFDPLVT ATEDLAAVNS APPLSNLTQE ELKKIAAYKA VEFVESGMVI GLGTGSTAKH AVARISELLR EGKLKDIIGI PTSTTTHEQA VSLGIPLSDL
101: DSHPVVDLSI DGADEVDPAL NLVKGRGGSL LREKMIEGAS KKFVVIVDES KLVKYIGGSG LAVPVEVVPF CCDFTRGKLE ELFRDSGCVA KLRMKIGSNG
201: EEAAPAVTDN RNYVVDLYLE RDIGDLEVAS EAILRFPGVV EHGMFLGMAT TLIVAGKFGV TVKDRFG

Arabidopsis Description

RPI1Probable ribose-5-phosphate isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C998]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.