Factsheet for TraesCS6B01G084400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS5A01G164600.1
TraesCS5B01G162100.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04790.1	TraesCS5A01G164600.1	AT4G22240.1	24937144
AT3G04790.1	TraesCS5B01G162100.1	AT4G22240.1	24937144
AT3G04790.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT3G04790.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT3G04790.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT3G04790.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT3G04790.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT3G04790.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G061600.2	Wheat	plastid	97.08	96.38
GSMUA_Achr9P10620_001	Banana	cytosol, extracellular	68.25	87.79
Os07t0176900-01	Rice	plastid	83.58	81.79
KXG34505	Sorghum	plastid	83.21	74.75
TraesCS6A01G063200.1	Wheat	plastid	81.39	74.33
KRH68720	Soybean	nucleus, plastid	74.82	72.95
VIT_14s0030g01900.t01	Wine grape	plastid	73.36	71.02
KRG96958	Soybean	plastid	72.26	70.46
PGSC0003DMT400050076	Potato	cytosol, plastid	70.44	66.1
Solyc01g097460.2.1	Tomato	plastid	70.44	65.87
AT3G04790.1	Thale cress	plastid	65.69	65.22
CDY21110	Canola	plastid	65.33	65.09
Bra040120.1-P	Field mustard	plastid	64.96	64.73
CDY41900	Canola	plastid	64.6	64.36
CDY50757	Canola	plastid	64.6	64.13
CDY30018	Canola	plastid	64.6	64.13
Bra040406.1-P	Field mustard	plastid	64.6	64.13
KRH44502	Soybean	plastid	36.13	53.8
Zm00001d018936_P001	Maize	cytosol, extracellular	75.91	51.36
GSMUA_Achr8P03140_001	Banana	plasma membrane	70.07	36.5
Solyc04g047740.1.1	Tomato	cytosol	19.71	36.24
TraesCS5B01G419300.1	Wheat	plastid	28.47	26.26
TraesCS2B01G520200.1	Wheat	cytosol	7.3	18.18
TraesCS7B01G282700.1	Wheat	cytosol	7.3	18.18

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	MapMan:1.2.9	Gene3D:3.30.70.260	Gene3D:3.40.50.1360
MapMan:3.9.2.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009052	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579
GO:GO:0009605	GO:GO:0009607	GO:GO:0009719	GO:GO:0009735	GO:GO:0009941	GO:GO:0009987
GO:GO:0016020	GO:GO:0042742	HAMAP:MF_00170	InterPro:NagB/RpiA_transferase-like	PFAM:PF06026	PANTHER:PTHR43748
PANTHER:PTHR43748:SF3	InterPro:Ribose5P_isomerase_typA	InterPro:Ribose5P_isomerase_typA_subgr	SUPFAM:SSF100950	SUPFAM:SSF75445	TIGRFAMs:TIGR00021
EnsemblPlantsGene:TraesCS6B01G084400	EnsemblPlants:TraesCS6B01G084400.1	TIGR:cd01398	SEG:seg	:	:

Description

No Description!

Coordinates

chr6B:+:61492760..61493739

Molecular Weight (calculated)

28603.6 Da

IEP (calculated)

6.951

GRAVY (calculated)

0.174

Length

274 amino acids

Sequence
(BLAST)

001: MAAAATATAV RLHAAATRRA APRRPARFAV RADAARAATA LTQDDLKRLA AVRAVEQVQS GMVLGLGTGS TAAFAVAEIG ALLASGKLSG IVGVPTSKRT
101: FEQAMSLGIP LSTLDDHPVI DLAIDGADEV DPDLNLVKGR GGALLREKMV EAASAKFVVV VDETKLVAGL GGSGLAMPVE VVQFCWKHNQ VRLQGLFNEE
201: GCEAKLRLNE DGKPYVTDNS NYIVDLYFKT PIRDALGAGK EIAALEGVVE HGLFLNMATS VIIAGSDGVS VKTK

Best Arabidopsis Sequence Match ( AT3G04790.1 )
(BLAST)

001: MASLSFVSSS HLTLRTPSIA LRSTGSSPRT SVSFSVKAQS VALSQDDLKK LAAEKAVEAI KPGMVLGLGT GSTAAFAVDQ IGKLLSSGEL YDIVGIPTSK
101: RTEEQARSLG IPLVGLDTHP RIDLAIDGAD EVDPNLDLVK GRGGALLREK MVEAVADKFI VVADDTKLVT GLGGSGLAMP VEVVQFCWNF NLIRLQDLFK
201: EFGCESKLRV DGDGKPYVTD NSNYIIDLYF KTPLKDGFAA AKEIGKFQGV VEHGLFLGMA TSVIIAGKNG VEVMTK

Arabidopsis Description

RPI3EMB3119 [Source:UniProtKB/TrEMBL;Acc:A0A178V804]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.