CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11500
KRH36517

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04790.1	KRH11500	AT4G22240.1	24937144
AT3G04790.1	KRH36517	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68720	Soybean	nucleus, plastid	92.53	92.53
GSMUA_Achr9P10620_001	Banana	cytosol, extracellular	63.7	84.04
KRH44502	Soybean	plastid	51.6	78.8
VIT_14s0030g01900.t01	Wine grape	plastid	75.8	75.27
TraesCS6B01G084400.1	Wheat	golgi	70.46	72.26
TraesCS6D01G061600.2	Wheat	plastid	70.46	71.74
Os07t0176900-01	Rice	plastid	71.17	71.43
TraesCS2A01G234900.1	Wheat	mitochondrion, plastid	69.04	71.32
TraesCS2D01G238600.2	Wheat	mitochondrion, plastid	69.75	70.25
PGSC0003DMT400050076	Potato	cytosol, plastid	71.17	68.49
Solyc01g097460.2.1	Tomato	plastid	71.17	68.26
CDY21110	Canola	plastid	66.19	67.64
AT3G04790.1	Thale cress	plastid	66.19	67.39
CDY41900	Canola	plastid	65.84	67.27
Bra040120.1-P	Field mustard	plastid	65.84	67.27
KXG34505	Sorghum	plastid	72.24	66.56
CDY30018	Canola	plastid	65.12	66.3
CDY50757	Canola	plastid	64.77	65.94
Bra040406.1-P	Field mustard	plastid	64.77	65.94
TraesCS6A01G063200.1	Wheat	plastid	65.48	61.33
KRG90972	Soybean	cytosol	54.45	57.74
KRH35797	Soybean	cytosol, mitochondrion	54.09	57.14
Zm00001d018936_P001	Maize	cytosol, extracellular	70.82	49.14
Solyc04g047740.1.1	Tomato	cytosol	19.57	36.91
GSMUA_Achr8P03140_001	Banana	plasma membrane	66.55	35.55
KRH11874	Soybean	plastid	23.13	22.34
KRH36898	Soybean	cytosol	6.76	18.81
KRH30286	Soybean	cytosol, nucleus	4.98	12.73
KRG98270	Soybean	cytosol	4.98	12.73

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	MapMan:1.2.9	EntrezGene:100781866	Gene3D:3.30.70.260
Gene3D:3.40.50.1360	MapMan:3.9.2.1	EMBL:ACUP02012169	EnsemblPlantsGene:GLYMA_19G243800	GO:GO:0003674	GO:GO:0003824
GO:GO:0004751	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009052	GO:GO:0009987
UniProt:I1NC83	EnsemblPlants:KRG96958	ProteinID:KRG96958	ProteinID:KRG96958.1	HAMAP:MF_00170	InterPro:NagB/RpiA_transferase-like
PFAM:PF06026	PANTHER:PTHR43748	PANTHER:PTHR43748:SF3	MetaCyc:PWY-1861	MetaCyc:PWY-5723	InterPro:Ribose5P_isomerase_typA
InterPro:Ribose5P_isomerase_typA_subgr	SUPFAM:SSF100950	SUPFAM:SSF75445	TIGRFAMs:TIGR00021	UniParc:UPI000233EB88	SEG:seg

Description

hypothetical protein

Coordinates

chr19:-:49121945..49123661

Molecular Weight (calculated)

29990.3 Da

IEP (calculated)

6.371

GRAVY (calculated)

0.062

Length

281 amino acids

Sequence
(BLAST)

001: MASLSLSSPP SLSSAHHNAS TRLILRTPNS LNLRTIPHSL PIRAITLTQD DLKRLAADKA VESVKSGMVL GLGTGSTAAF VVAKLGALLA SGQLTDIVGV
101: PTSKRTEEQA RSLGIPLSVL DHNPRLDLAI DGADEVDPDL NLVKGRGGAL LREKMVEAAS DKFVVVVDDT KLVDGLGGSG LAMPVEVVQF CWKYNLDRLQ
201: ELFKEEGVEA KLRLEESGKP YVSDNSNYIV DLYFKTPIRD ALAAGAEISA LEGVVDHGLF LNMATSVIIA AKSGVQVRLR R

Best Arabidopsis Sequence Match ( AT3G04790.1 )
(BLAST)

001: MASLSFVSSS HLTLRTPSIA LRSTGSSPRT SVSFSVKAQS VALSQDDLKK LAAEKAVEAI KPGMVLGLGT GSTAAFAVDQ IGKLLSSGEL YDIVGIPTSK
101: RTEEQARSLG IPLVGLDTHP RIDLAIDGAD EVDPNLDLVK GRGGALLREK MVEAVADKFI VVADDTKLVT GLGGSGLAMP VEVVQFCWNF NLIRLQDLFK
201: EFGCESKLRV DGDGKPYVTD NSNYIIDLYF KTPLKDGFAA AKEIGKFQGV VEHGLFLGMA TSVIIAGKNG VEVMTK

Arabidopsis Description

RPI3EMB3119 [Source:UniProtKB/TrEMBL;Acc:A0A178V804]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.