CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98270	Soybean	cytosol	100.0	100.0
CDY06683	Canola	cytosol	98.18	98.18
CDY10254	Canola	cytosol	98.18	98.18
CDY29709	Canola	cytosol	98.18	98.18
CDX96931	Canola	cytosol	97.27	97.27
CDY66019	Canola	cytosol	97.27	97.27
KRG90972	Soybean	cytosol	22.73	9.43
KRH35797	Soybean	cytosol, mitochondrion	21.82	9.02
KRG96958	Soybean	plastid	12.73	4.98
KRH68720	Soybean	nucleus, plastid	12.73	4.98
KRH44502	Soybean	plastid	8.18	4.89
KRH11874	Soybean	plastid	11.82	4.47
KRH36898	Soybean	cytosol	3.64	3.96

Protein Annotations

EntrezGene:100305969	EntrezGene:100777021	MapMan:16.4.1.2.5	EMBL:ACUP02006949	EMBL:ACUP02010861	EMBL:BT089838
UniProt:C6SXE4	ncoils:Coil	EnsemblPlantsGene:GLYMA_11G173100	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005686	GO:GO:0005689	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0071011	GO:GO:0071013	ProteinID:KRG98270.1	ProteinID:KRG98271.1
EnsemblPlants:KRH30286	ProteinID:KRH30286	ProteinID:KRH30286.1	PFAM:PF03660	InterPro:PHF5	PIRSF:PIRSF016468
PANTHER:PTHR13120	PANTHER:PTHR13120:SF1	UniParc:UPI00001B1855	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:18831033..18833463

Molecular Weight (calculated)

12415.2 Da

IEP (calculated)

8.485

GRAVY (calculated)

-0.435

Length

110 amino acids

Sequence
(BLAST)

001: MAKHHPDLIM CRKQPGIAIG RLCEKCDGKC VICDSYVRPC TLVRVCDECN YGSFQGRCVI CGGVGISDAY YCKECTQQEK DRDGCPKIVN LGSAKTDLFY
101: ERKKYGFKKR

Best Arabidopsis Sequence Match ( AT1G07170.5 )
(BLAST)

001: MAKHHPDLIM CRKQPGIAIG RLCEKCDGKC VICDSYVRPC TLVRICDECN YGSFQGRCVI CGGVGISDAY YCKECTQQEK DRDGCPKIVN LGSAKTDLFY
101: ERKKYGFKKR

Arabidopsis Description

PHD finger-like domain-containing protein 5A [Source:UniProtKB/Swiss-Prot;Acc:P0DI19]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.