CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11500
KRH36517

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04790.1	KRH11500	AT4G22240.1	24937144
AT3G04790.1	KRH36517	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96958	Soybean	plastid	92.53	92.53
GSMUA_Achr9P10620_001	Banana	cytosol, extracellular	65.84	86.85
VIT_14s0030g01900.t01	Wine grape	plastid	78.29	77.74
TraesCS6B01G084400.1	Wheat	golgi	72.95	74.82
TraesCS6D01G061600.2	Wheat	plastid	72.95	74.28
KRH44502	Soybean	plastid	48.4	73.91
TraesCS2A01G234900.1	Wheat	mitochondrion, plastid	71.53	73.9
Os07t0176900-01	Rice	plastid	73.31	73.57
TraesCS2D01G238600.2	Wheat	mitochondrion, plastid	72.24	72.76
PGSC0003DMT400050076	Potato	cytosol, plastid	72.95	70.21
Solyc01g097460.2.1	Tomato	plastid	72.95	69.97
CDY21110	Canola	plastid	67.62	69.09
AT3G04790.1	Thale cress	plastid	67.62	68.84
CDY41900	Canola	plastid	67.26	68.73
Bra040120.1-P	Field mustard	plastid	67.26	68.73
CDY30018	Canola	plastid	66.55	67.75
CDY50757	Canola	plastid	66.19	67.39
Bra040406.1-P	Field mustard	plastid	66.19	67.39
KXG34505	Sorghum	plastid	72.95	67.21
TraesCS6A01G063200.1	Wheat	plastid	67.97	63.67
KRG90972	Soybean	cytosol	56.23	59.62
KRH35797	Soybean	cytosol, mitochondrion	55.87	59.02
Zm00001d018936_P001	Maize	cytosol, extracellular	72.95	50.62
Solyc04g047740.1.1	Tomato	cytosol	19.93	37.58
GSMUA_Achr8P03140_001	Banana	plasma membrane	68.68	36.69
KRH11874	Soybean	plastid	23.49	22.68
KRH36898	Soybean	cytosol	7.12	19.8
KRH30286	Soybean	cytosol, nucleus	4.98	12.73
KRG98270	Soybean	cytosol	4.98	12.73

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	MapMan:1.2.9	Gene3D:3.30.70.260	Gene3D:3.40.50.1360
MapMan:3.9.2.1	UniProt:A0A0R0KPC8	EMBL:ACUP02002123	EnsemblPlantsGene:GLYMA_03G246300	GO:GO:0003674	GO:GO:0003824
GO:GO:0004751	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009052	GO:GO:0009987
EnsemblPlants:KRH68720	ProteinID:KRH68720	ProteinID:KRH68720.1	HAMAP:MF_00170	InterPro:NagB/RpiA_transferase-like	PFAM:PF06026
PANTHER:PTHR43748	PANTHER:PTHR43748:SF3	MetaCyc:PWY-1861	MetaCyc:PWY-5723	InterPro:Ribose5P_isomerase_typA	InterPro:Ribose5P_isomerase_typA_subgr
SUPFAM:SSF100950	SUPFAM:SSF75445	TIGRFAMs:TIGR00021	UniParc:UPI0001CA9BD4	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:44333965..44335328

Molecular Weight (calculated)

29784.0 Da

IEP (calculated)

5.431

GRAVY (calculated)

0.049

Length

281 amino acids

Sequence
(BLAST)

001: MASLSLSSPP SLSSAHHNAS TRLILRTPNS LKLRTPPHSL PAIRAITLTQ DDLKRLAADK AVESVKSGMV LGLGTGSTAA FVVAKLGALL ASGQLSDIVG
101: VPTSKRTEEQ ARSLGIPLSV LDDNPRLDLA IDGADEVDPD LNLVKGRGGA LLREKMVEAA SDKFVVVVDD TKLVDGLGGS GLAMPVEVVQ FCWKYNLDRL
201: QELFKEEGVE AKLRLEESGK PYVTDNSNYI VDLYFKTPIR DALAAGAEIS ALEGVVEHGL FLNMATSVII AGKSGVEVKA K

Best Arabidopsis Sequence Match ( AT3G04790.1 )
(BLAST)

001: MASLSFVSSS HLTLRTPSIA LRSTGSSPRT SVSFSVKAQS VALSQDDLKK LAAEKAVEAI KPGMVLGLGT GSTAAFAVDQ IGKLLSSGEL YDIVGIPTSK
101: RTEEQARSLG IPLVGLDTHP RIDLAIDGAD EVDPNLDLVK GRGGALLREK MVEAVADKFI VVADDTKLVT GLGGSGLAMP VEVVQFCWNF NLIRLQDLFK
201: EFGCESKLRV DGDGKPYVTD NSNYIIDLYF KTPLKDGFAA AKEIGKFQGV VEHGLFLGMA TSVIIAGKNG VEVMTK

Arabidopsis Description

RPI3EMB3119 [Source:UniProtKB/TrEMBL;Acc:A0A178V804]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.