Factsheet for TraesCS6D01G061600.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 16595579
plastid: 18419817

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS5A01G164600.1
TraesCS5B01G162100.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04790.1	TraesCS5A01G164600.1	AT4G22240.1	24937144
AT3G04790.1	TraesCS5B01G162100.1	AT4G22240.1	24937144
AT3G04790.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT3G04790.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT3G04790.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT3G04790.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT3G04790.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT3G04790.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G084400.1	Wheat	golgi	96.38	97.08
TraesCS2D01G238600.2	Wheat	mitochondrion, plastid	93.84	92.83
GSMUA_Achr9P10620_001	Banana	cytosol, extracellular	68.48	88.73
Os07t0176900-01	Rice	plastid	83.7	82.5
KXG34505	Sorghum	plastid	82.25	74.43
TraesCS6A01G063200.1	Wheat	plastid	80.8	74.33
KRH68720	Soybean	nucleus, plastid	74.28	72.95
VIT_14s0030g01900.t01	Wine grape	plastid	73.19	71.38
KRG96958	Soybean	plastid	71.74	70.46
AT3G04790.1	Thale cress	plastid	66.3	66.3
CDY21110	Canola	plastid	65.58	65.82
PGSC0003DMT400050076	Potato	cytosol, plastid	69.57	65.75
Solyc01g097460.2.1	Tomato	plastid	69.57	65.53
Bra040120.1-P	Field mustard	plastid	65.22	65.45
CDY41900	Canola	plastid	64.86	65.09
CDY50757	Canola	plastid	64.86	64.86
CDY30018	Canola	plastid	64.86	64.86
Bra040406.1-P	Field mustard	plastid	64.86	64.86
KRH44502	Soybean	plastid	36.23	54.35
Zm00001d018936_P001	Maize	cytosol, extracellular	75.72	51.6
TraesCS2D01G271700.1	Wheat	cytosol	44.57	48.05
GSMUA_Achr8P03140_001	Banana	plasma membrane	70.29	36.88
Solyc04g047740.1.1	Tomato	cytosol	19.2	35.57
TraesCS5D01G424700.1	Wheat	plastid	28.26	26.09
TraesCS5D01G424600.1	Wheat	mitochondrion	8.33	20.0
TraesCS2D01G492300.1	Wheat	cytosol	7.25	18.18
TraesCS7D01G377100.1	Wheat	cytosol	7.25	18.18

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	MapMan:1.2.9	Gene3D:3.30.70.260	Gene3D:3.40.50.1360
MapMan:3.9.2.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009052	GO:GO:0009987	HAMAP:MF_00170	InterPro:NagB/RpiA_transferase-like	PFAM:PF06026
PANTHER:PTHR43748	PANTHER:PTHR43748:SF3	InterPro:Ribose5P_isomerase_typA	InterPro:Ribose5P_isomerase_typA_subgr	SUPFAM:SSF100950	SUPFAM:SSF75445
TIGRFAMs:TIGR00021	EnsemblPlantsGene:TraesCS6D01G061600	EnsemblPlants:TraesCS6D01G061600.2	TIGR:cd01398	SEG:seg	:

Description

No Description!

Coordinates

chr6D:-:28700807..28701787

Molecular Weight (calculated)

28757.7 Da

IEP (calculated)

6.529

GRAVY (calculated)

0.145

Length

276 amino acids

Sequence
(BLAST)

001: MAAAATATAT AVRLHAAATR RAAPRRPARL AVRADAARAA TALTQDDLKR LAAVRAVEQV QSGMVLGLGT GSTAAFAVAE IGALLASGKL SGIVGVPTSK
101: RTFEQATSLG IPLSTLDDHP VIDLAIDGAD EVDPDLNLVK GRGGALLREK MVEAASGKFV VVVDETKLVT GLGGSGLAMP VEVVQFCWKH NQVRLQDLFN
201: EEGCEAKLRL NEDGKPYVTD NSNYIVDLYF KTPIKDALGA GKEIAALEGV VEHGLFLNMA TSVIIAGSDG VSVKTK

Best Arabidopsis Sequence Match ( AT3G04790.1 )
(BLAST)

001: MASLSFVSSS HLTLRTPSIA LRSTGSSPRT SVSFSVKAQS VALSQDDLKK LAAEKAVEAI KPGMVLGLGT GSTAAFAVDQ IGKLLSSGEL YDIVGIPTSK
101: RTEEQARSLG IPLVGLDTHP RIDLAIDGAD EVDPNLDLVK GRGGALLREK MVEAVADKFI VVADDTKLVT GLGGSGLAMP VEVVQFCWNF NLIRLQDLFK
201: EFGCESKLRV DGDGKPYVTD NSNYIIDLYF KTPLKDGFAA AKEIGKFQGV VEHGLFLGMA TSVIIAGKNG VEVMTK

Arabidopsis Description

RPI3EMB3119 [Source:UniProtKB/TrEMBL;Acc:A0A178V804]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.