Factsheet for Solyc04g047740.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g081170.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04790.1	Solyc02g081170.2.1	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P10620_001	Banana	cytosol, extracellular	35.57	24.88
PGSC0003DMT400050076	Potato	cytosol, plastid	44.3	22.6
Solyc01g097460.2.1	Tomato	plastid	44.3	22.53
VIT_14s0030g01900.t01	Wine grape	plastid	38.93	20.49
KRH68720	Soybean	nucleus, plastid	37.58	19.93
TraesCS6B01G084400.1	Wheat	golgi	36.24	19.71
KRG96958	Soybean	plastid	36.91	19.57
TraesCS6D01G061600.2	Wheat	plastid	35.57	19.2
TraesCS2A01G234900.1	Wheat	mitochondrion, plastid	34.9	19.12
TraesCS2D01G238600.2	Wheat	mitochondrion, plastid	35.57	19.0
Os07t0176900-01	Rice	plastid	35.57	18.93
AT3G04790.1	Thale cress	plastid	34.9	18.84
KXG34505	Sorghum	plastid	37.58	18.36
Bra040120.1-P	Field mustard	plastid	33.56	18.18
CDY21110	Canola	plastid	32.89	17.82
CDY30018	Canola	plastid	32.89	17.75
TraesCS6A01G063200.1	Wheat	plastid	35.57	17.67
CDY41900	Canola	plastid	32.21	17.45
CDY50757	Canola	plastid	32.21	17.39
Bra040406.1-P	Field mustard	plastid	32.21	17.39
Solyc05g008370.1.1	Tomato	cytosol	29.53	16.42
Zm00001d018936_P001	Maize	cytosol, extracellular	36.24	13.33
GSMUA_Achr8P03140_001	Banana	plasma membrane	37.58	10.65
Solyc02g069620.2.1	Tomato	plastid	16.78	8.45
KRH44502	Soybean	plastid	9.4	7.61

Protein Annotations

EnsemblPlants:Solyc04g047740.1.1	EnsemblPlantsGene:Solyc04g047740.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009052	GO:GO:0009987	InterPro:Ribose5P_isomerase_typA	KEGG:00030+5.3.1.6
KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	PANTHER:PTHR43748	PANTHER:PTHR43748:SF3	PFAM:PF06026	SUPFAM:SSF75445
UniParc:UPI000276642E	UniProt:K4BRK2	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr4:-:36539388..36540168

Molecular Weight (calculated)

17341.1 Da

IEP (calculated)

6.348

GRAVY (calculated)

-0.008

Length

149 amino acids

Sequence
(BLAST)

001: MFCLLTQPHY QHSLQKHIHA VDEVDPNLNI FEVKEELFYE RRLWMRRMII SLLWSMIRSL FQVFLDQGWE LFKEEGVDAN LTLDGNGKPY VAYYSNYIID
101: LYIRTPIRDY AAPGKDIASF KGVVDHGLFL DIPTVIIIAG KEGVSVKCK

Best Arabidopsis Sequence Match ( AT3G04790.1 )
(BLAST)

001: MASLSFVSSS HLTLRTPSIA LRSTGSSPRT SVSFSVKAQS VALSQDDLKK LAAEKAVEAI KPGMVLGLGT GSTAAFAVDQ IGKLLSSGEL YDIVGIPTSK
101: RTEEQARSLG IPLVGLDTHP RIDLAIDGAD EVDPNLDLVK GRGGALLREK MVEAVADKFI VVADDTKLVT GLGGSGLAMP VEVVQFCWNF NLIRLQDLFK
201: EFGCESKLRV DGDGKPYVTD NSNYIIDLYF KTPLKDGFAA AKEIGKFQGV VEHGLFLGMA TSVIIAGKNG VEVMTK

Arabidopsis Description

RPI3EMB3119 [Source:UniProtKB/TrEMBL;Acc:A0A178V804]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.