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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:mitochondrion
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra040120.1-P Field mustard plastid 89.13 89.45
CDY21110 Canola plastid 88.77 89.09
CDY41900 Canola plastid 88.41 88.73
CDY30018 Canola plastid 87.68 87.68
Bra040406.1-P Field mustard plastid 82.61 82.61
CDY50757 Canola plastid 82.61 82.61
GSMUA_Achr9P10620_001 Banana cytosol, extracellular 61.59 79.81
KRH68720 Soybean nucleus, plastid 68.84 67.62
Os07t0176900-01 Rice plastid 68.48 67.5
VIT_14s0030g01900.t01 Wine grape plastid 68.84 67.14
TraesCS6D01G061600.2 Wheat plastid 66.3 66.3
KRG96958 Soybean plastid 67.39 66.19
TraesCS2A01G234900.1 Wheat mitochondrion, plastid 64.86 65.81
PGSC0003DMT400050076 Potato cytosol, plastid 69.57 65.75
TraesCS6B01G084400.1 Wheat golgi 65.22 65.69
Solyc01g097460.2.1 Tomato plastid 69.57 65.53
TraesCS2D01G238600.2 Wheat mitochondrion, plastid 65.22 64.52
KXG34505 Sorghum plastid 65.58 59.34
TraesCS6A01G063200.1 Wheat plastid 59.78 55.0
KRH44502 Soybean plastid 35.51 53.26
AT2G01290.1 Thale cress cytosol 50.36 52.45
AT1G71100.1 Thale cress cytosol 50.36 52.06
Zm00001d018936_P001 Maize cytosol, extracellular 63.41 43.21
Solyc04g047740.1.1 Tomato cytosol 18.84 34.9
GSMUA_Achr8P03140_001 Banana plasma membrane 64.86 34.03
AT5G44520.2 Thale cress cytosol, plastid 26.81 22.7
Protein Annotations
KEGG:00030+5.3.1.6KEGG:00051+5.3.1.6KEGG:00710+5.3.1.6MapMan:1.2.9Gene3D:3.30.70.260Gene3D:3.40.50.1360
MapMan:3.9.2.1EntrezGene:819639UniProt:A0A178V804ProteinID:AAF04905.1ProteinID:AAG51427.1ProteinID:AEE74136.1
ArrayExpress:AT3G04790EnsemblPlantsGene:AT3G04790RefSeq:AT3G04790TAIR:AT3G04790RefSeq:AT3G04790-TAIR-GEnsemblPlants:AT3G04790.1
TAIR:AT3G04790.1EMBL:AY045785EMBL:AY088382EMBL:AY142600Unigene:At.75595GO:GO:0003674
GO:GO:0003824GO:GO:0004751GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005975GO:GO:0006098GO:GO:0006139GO:GO:0006950GO:GO:0008150GO:GO:0008152
GO:GO:0009052GO:GO:0009058GO:GO:0009507GO:GO:0009535GO:GO:0009536GO:GO:0009570
GO:GO:0009579GO:GO:0009605GO:GO:0009607GO:GO:0009719GO:GO:0009735GO:GO:0009941
GO:GO:0009987GO:GO:0015979GO:GO:0016020GO:GO:0016853GO:GO:0019253GO:GO:0042742
HAMAP:MF_00170RefSeq:NP_187130.1InterPro:NagB/RpiA_transferase-likeProteinID:OAP02420.1PFAM:PF06026PO:PO:0000013
PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081
PO:PO:0001185PO:PO:0004507PO:PO:0006339PO:PO:0007064PO:PO:0007095PO:PO:0007098
PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007131PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009001PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010
PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046
PO:PO:0009047PO:PO:0009049PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025281PANTHER:PTHR43748PANTHER:PTHR43748:SF3UniProt:Q9S726
InterPro:Ribose5P_isomerase_typAInterPro:Ribose5P_isomerase_typA_subgrSUPFAM:SSF100950SUPFAM:SSF75445TIGRFAMs:TIGR00021UniParc:UPI00000486A8
SEG:seg:::::
Description
RPI3EMB3119 [Source:UniProtKB/TrEMBL;Acc:A0A178V804]
Coordinates
chr3:+:1313297..1314288
Molecular Weight (calculated)
29307.5 Da
IEP (calculated)
5.805
GRAVY (calculated)
0.116
Length
276 amino acids
Sequence
(BLAST)
001: MASLSFVSSS HLTLRTPSIA LRSTGSSPRT SVSFSVKAQS VALSQDDLKK LAAEKAVEAI KPGMVLGLGT GSTAAFAVDQ IGKLLSSGEL YDIVGIPTSK
101: RTEEQARSLG IPLVGLDTHP RIDLAIDGAD EVDPNLDLVK GRGGALLREK MVEAVADKFI VVADDTKLVT GLGGSGLAMP VEVVQFCWNF NLIRLQDLFK
201: EFGCESKLRV DGDGKPYVTD NSNYIIDLYF KTPLKDGFAA AKEIGKFQGV VEHGLFLGMA TSVIIAGKNG VEVMTK
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.