Factsheet for VIT_14s0030g01900.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P10620_001	Banana	cytosol, extracellular	66.78	88.73
KRH68720	Soybean	nucleus, plastid	77.74	78.29
KRG96958	Soybean	plastid	75.27	75.8
TraesCS2A01G234900.1	Wheat	mitochondrion, plastid	70.67	73.53
TraesCS6B01G084400.1	Wheat	golgi	71.02	73.36
Os07t0176900-01	Rice	plastid	72.44	73.21
TraesCS6D01G061600.2	Wheat	plastid	71.38	73.19
PGSC0003DMT400050076	Potato	cytosol, plastid	74.91	72.6
Solyc01g097460.2.1	Tomato	plastid	74.91	72.35
TraesCS2D01G238600.2	Wheat	mitochondrion, plastid	71.02	72.04
AT3G04790.1	Thale cress	plastid	67.14	68.84
Bra040120.1-P	Field mustard	plastid	66.43	68.36
CDY41900	Canola	plastid	66.08	68.0
CDY21110	Canola	plastid	66.08	68.0
CDY50757	Canola	plastid	65.37	67.03
CDY30018	Canola	plastid	65.37	67.03
Bra040406.1-P	Field mustard	plastid	65.37	67.03
KXG34505	Sorghum	plastid	71.02	65.9
TraesCS6A01G063200.1	Wheat	plastid	65.72	62.0
KRH44502	Soybean	plastid	39.22	60.33
VIT_01s0011g04630.t01	Wine grape	cytosol	56.18	59.11
VIT_06s0004g03340.t01	Wine grape	plastid	56.89	52.96
Zm00001d018936_P001	Maize	cytosol, extracellular	68.9	48.15
Solyc04g047740.1.1	Tomato	cytosol	20.49	38.93
GSMUA_Achr8P03140_001	Banana	plasma membrane	70.32	37.83
VIT_10s0092g00090.t01	Wine grape	cytosol	21.91	27.07

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	MapMan:1.2.9	EntrezGene:100264080	wikigene:100264080
Gene3D:3.30.70.260	Gene3D:3.40.50.1360	MapMan:3.9.2.1	ProteinID:CCB58087	ProteinID:CCB58087.1	UniProt:F6HTS6
EMBL:FN596249	GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009052	GO:GO:0009987	EntrezGene:LOC100264080	wikigene:LOC100264080	HAMAP:MF_00170
InterPro:NagB/RpiA_transferase-like	PFAM:PF06026	PANTHER:PTHR43748	PANTHER:PTHR43748:SF3	InterPro:Ribose5P_isomerase_typA	InterPro:Ribose5P_isomerase_typA_subgr
SUPFAM:SSF100950	SUPFAM:SSF75445	TIGRFAMs:TIGR00021	UniParc:UPI00015CB90B	ArrayExpress:VIT_14s0030g01900	EnsemblPlantsGene:VIT_14s0030g01900
EnsemblPlants:VIT_14s0030g01900.t01	unigene:Vvi.19922	RefSeq:XP_002278297	RefSeq:XP_002278297.1	SEG:seg	:

Description

No Description!

Coordinates

chr14:-:6797046..6798069

Molecular Weight (calculated)

30246.7 Da

IEP (calculated)

7.215

GRAVY (calculated)

0.042

Length

283 amino acids

Sequence
(BLAST)

001: MATLSLLSPP KSHSLSSLHH RNALSLRTSS TLTPRTRPLL SIRAFSAPAL TQDDLKKLAA DKAVDYVKSG MVLGLGTGST AAFVVAKLGH LLKTGQLSDI
101: VGVPTSKRTE EQALSLGIPL SVLDHHPSID LAIDGADEVD PDLNLVKGRG GALLREKMVE AASDKFVVVV DDTKLVNGLG GSGLAMPVEV VQFCWKYNLV
201: RLQELFKEEG CEAKLRLNPD GKPYVTDNSN YIVDLYFKTP IKDSIAAGKE ISSFEGVVEH GLFLDMATAV IIAGKDGVTV KTK

Best Arabidopsis Sequence Match ( AT3G04790.1 )
(BLAST)

001: MASLSFVSSS HLTLRTPSIA LRSTGSSPRT SVSFSVKAQS VALSQDDLKK LAAEKAVEAI KPGMVLGLGT GSTAAFAVDQ IGKLLSSGEL YDIVGIPTSK
101: RTEEQARSLG IPLVGLDTHP RIDLAIDGAD EVDPNLDLVK GRGGALLREK MVEAVADKFI VVADDTKLVT GLGGSGLAMP VEVVQFCWNF NLIRLQDLFK
201: EFGCESKLRV DGDGKPYVTD NSNYIIDLYF KTPLKDGFAA AKEIGKFQGV VEHGLFLGMA TSVIIAGKNG VEVMTK

Arabidopsis Description

RPI3EMB3119 [Source:UniProtKB/TrEMBL;Acc:A0A178V804]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.