Factsheet for VIT_10s0092g00090.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P10110_001	Banana	mitochondrion	67.25	66.38
KRH36898	Soybean	cytosol	27.51	62.38
KRH11874	Soybean	plastid	75.98	59.79
Solyc02g069620.2.1	Tomato	plastid	67.25	52.03
CDY49016	Canola	plastid	63.76	51.59
Bra033747.1-P	Field mustard	plastid	62.45	50.53
CDY49497	Canola	plastid	63.32	49.49
PGSC0003DMT400054453	Potato	plastid	64.63	45.68
TraesCS5D01G424700.1	Wheat	plastid	59.39	45.48
TraesCS5A01G417000.1	Wheat	plastid	58.95	45.45
TraesCS5B01G419300.1	Wheat	plastid	58.95	45.45
Os03t0781400-01	Rice	plastid	58.95	45.15
KXG37436	Sorghum	plastid	57.64	45.05
AT5G44520.2	Thale cress	cytosol, plastid	62.88	44.17
Zm00001d013135_P002	Maize	plastid	56.77	40.5
VIT_01s0011g04630.t01	Wine grape	cytosol	27.07	23.05
VIT_14s0030g01900.t01	Wine grape	plastid	27.07	21.91
VIT_06s0004g03340.t01	Wine grape	plastid	28.38	21.38

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	EntrezGene:100240835	wikigene:100240835	Gene3D:3.30.70.260
Gene3D:3.40.50.1360	MapMan:35.1	ProteinID:CCB61485	ProteinID:CCB61485.1	UniProt:F6I3G7	EMBL:FN596741
GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009052	GO:GO:0009987	EntrezGene:LOC100240835	wikigene:LOC100240835	InterPro:NagB/RpiA_transferase-like	PFAM:PF06026
PANTHER:PTHR43748	PANTHER:PTHR43748:SF1	InterPro:Ribose5P_isomerase_typA	SUPFAM:SSF100950	SUPFAM:SSF75445	UniParc:UPI00021088DA
ArrayExpress:VIT_10s0092g00090	EnsemblPlantsGene:VIT_10s0092g00090	EnsemblPlants:VIT_10s0092g00090.t01	RefSeq:XP_002270834	RefSeq:XP_002270834.1	:

Description

No Description!

Coordinates

chr10:-:11207917..11222730

Molecular Weight (calculated)

24771.8 Da

IEP (calculated)

4.385

GRAVY (calculated)

0.129

Length

229 amino acids

Sequence
(BLAST)

001: MVIGLGSGHA SDMAIQYLGR QLRTGALKDI TGIPMSVASA SEAAKVGIPL GHYQDCSQID FAFDDADVIE EGTLVAIIGR RRLQGNESII QEKSILKAAD
101: KLVFIIQEKQ YKCDLEGLIP VLVQSLNWME TAEEIDDLFL GDAEVWRRPS IGHAGPLGGD FPLVTSEGHN ILDVIFTSPI LKLAEVAESL DKIDGVVEHG
201: VISKIPCIAV ITSDSGMYTV DNLQAVRER

Best Arabidopsis Sequence Match ( AT5G44520.2 )
(BLAST)

001: MHHKTDREIR AVKTTESRLS DSNRSSHTKK MVTATASTPF SLSSSVVFTR RRNFKRFPVC ASLSPEVSPL LRAAHHTVDN YVKSGMIIGL GSGEASDFAI
101: RYLGQQLGSG SLHNVVGVPM SARSASEAAK YGIPLEYYRD GVQIDFAFHD ADAVEENTLI AVIGRRRSSQ EDDYILKQKS IVKVADEAVF MIKEEQYKAG
201: LEGSIPVLVQ SLNWLAIAEE IDDLYLGDAE VWRRASVENE GPLGGDFPIV TSDGHNILDV IFTTPIRSLA DLATSLDKID GVVDHGLIIK TRCTVVIAEE
301: TVVRSVTLQT SALEGGVRTY GQTLQK

Arabidopsis Description

NagB/RpiA/CoA transferase-like superfamily protein [Source:TAIR;Acc:AT5G44520]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.