Factsheet for VIT_06s0004g03340.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g04630.t01	Wine grape	cytosol	82.89	93.68
KRG90972	Soybean	cytosol	70.39	80.75
KRH35797	Soybean	cytosol, mitochondrion	70.39	80.45
Solyc05g008370.1.1	Tomato	cytosol	68.42	77.61
PGSC0003DMT400015282	Potato	cytosol	67.43	77.07
PGSC0003DMT400078358	Potato	cytosol, plastid	67.76	76.87
AT2G01290.1	Thale cress	cytosol	61.51	70.57
CDY37370	Canola	cytosol	61.18	69.66
CDX77814	Canola	cytosol	60.86	69.55
CDY40387	Canola	cytosol	60.86	69.29
Bra014328.1-P	Field mustard	cytosol	60.86	69.29
CDY09514	Canola	cytosol	58.22	68.34
AT1G71100.1	Thale cress	cytosol	59.87	68.16
CDY03702	Canola	cytosol	57.89	67.95
Bra007961.1-P	Field mustard	cytosol	57.89	67.95
CDY17683	Canola	cytosol	60.86	64.46
GSMUA_Achr3P29130_001	Banana	cytosol, mitochondrion	43.42	62.56
GSMUA_Achr4P11200_001	Banana	cytosol	51.64	61.33
Bra024892.1-P	Field mustard	cytosol	53.62	60.82
GSMUA_Achr4P06520_001	Banana	cytosol	50.33	59.07
GSMUA_Achr4P03710_001	Banana	plastid	50.0	58.24
VIT_14s0030g01900.t01	Wine grape	plastid	52.96	56.89
EES09254	Sorghum	cytosol	46.71	54.62
TraesCS2D01G271700.1	Wheat	cytosol	43.75	51.95
Os04t0306400-01	Rice	cytosol	45.07	49.82
OQU79375	Sorghum	cytosol	22.37	49.28
HORVU2Hr1G066480.1	Barley	plastid	30.26	45.1
Zm00001d052482_P001	Maize	cytosol	15.13	43.4
VIT_10s0092g00090.t01	Wine grape	cytosol	21.38	28.38
Zm00001d030701_P001	Maize	extracellular	46.71	24.48

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	EntrezGene:100257096	wikigene:100257096	Gene3D:3.30.70.260
Gene3D:3.40.50.1360	MapMan:3.9.2.1	ProteinID:CCB43644	ProteinID:CCB43644.1	UniProt:F6GTY0	EMBL:FN594951
GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009052	GO:GO:0009987	EntrezGene:LOC100257096	wikigene:LOC100257096	HAMAP:MF_00170	InterPro:NagB/RpiA_transferase-like
PFAM:PF06026	PANTHER:PTHR43748	PANTHER:PTHR43748:SF2	InterPro:Ribose5P_isomerase_typA	InterPro:Ribose5P_isomerase_typA_subgr	SUPFAM:SSF100950
SUPFAM:SSF75445	TIGRFAMs:TIGR00021	UniParc:UPI000210A5F9	ArrayExpress:VIT_06s0004g03340	EnsemblPlantsGene:VIT_06s0004g03340	EnsemblPlants:VIT_06s0004g03340.t01
RefSeq:XP_002282058	RefSeq:XP_002282058.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:4195480..4196807

Molecular Weight (calculated)

33104.3 Da

IEP (calculated)

5.672

GRAVY (calculated)

0.093

Length

304 amino acids

Sequence
(BLAST)

001: MAIAYPHFIG SQKSAMETGM ISSPSSSSPS RPPVILTQDE LKKIAAYKAV EYVESGMVLG LGTGSTAKHA VDRIGELLRQ GKLKNIVGIP TSKMTHEQAV
101: SLGIPLSDLD SYPILDLAID GADEVDPYLN LVKGRGGSLL REKMVEGACK KFVVIVDESK LVNYLGGSGL AMPVEIVPFC WKFTAQRLQM LFEESGCVAK
201: LRTYQNGEPF VTDNMNYIVD LYFKREIGDL KVASDAILRL AGVVEHGMFI DMATTLIVAG ECGVIVKDKW DSASHRSILA SWQSIDTPVG EFEVSPRIFC
301: QAHI

Best Arabidopsis Sequence Match ( AT2G01290.1 )
(BLAST)

001: MALAYDPLFI TSDKSLSAFD VASSPPQPMN LTQDELKRIA AYKAVEFVES GMVLGLGTGS TAKHAVDRIG ELLRQGKLEN IVGIPTSKKT QEQALSLGIP
101: LSDLDAHPVI DLSIDGADEV DPFLNLVKGR GGSLLREKMI EGASKKFVVI VDDSKMVKHI GGSKLALPVE IVPFCWKFTA EKLRSLLEGY GCEANLRLGE
201: KGKAFVTDNG NYIVDMHVEE DMGDLGAVSD AILRLPGVVE HGMFLDMAST VIIAGELGVK IKNKH

Arabidopsis Description

RPI2Probable ribose-5-phosphate isomerase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.