Factsheet for Os04t0306400-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G271700.1	Wheat	cytosol	73.82	79.3
OQU79375	Sorghum	cytosol	38.18	76.09
HORVU2Hr1G066480.1	Barley	plastid	50.18	67.65
GSMUA_Achr3P29130_001	Banana	cytosol, mitochondrion	50.18	65.4
GSMUA_Achr4P11200_001	Banana	cytosol	58.91	63.28
GSMUA_Achr4P03710_001	Banana	plastid	58.91	62.07
GSMUA_Achr4P06520_001	Banana	cytosol	57.09	60.62
CDY37370	Canola	cytosol	52.73	54.31
CDX77814	Canola	cytosol	52.0	53.76
Bra014328.1-P	Field mustard	cytosol	51.64	53.18
CDY40387	Canola	cytosol	51.64	53.18
KRH35797	Soybean	cytosol, mitochondrion	51.27	53.01
AT2G01290.1	Thale cress	cytosol	50.91	52.83
PGSC0003DMT400015282	Potato	cytosol	50.55	52.26
KRG90972	Soybean	cytosol	50.18	52.08
AT1G71100.1	Thale cress	cytosol	50.55	52.06
VIT_01s0011g04630.t01	Wine grape	cytosol	50.55	51.67
CDY09514	Canola	cytosol	48.36	51.35
CDY03702	Canola	cytosol	48.36	51.35
Bra007961.1-P	Field mustard	cytosol	48.0	50.97
Solyc05g008370.1.1	Tomato	cytosol	48.0	49.25
PGSC0003DMT400078358	Potato	cytosol, plastid	47.64	48.88
CDY17683	Canola	cytosol	50.55	48.43
Bra024892.1-P	Field mustard	cytosol	46.55	47.76
Os07t0176900-01	Rice	plastid	46.18	45.36
VIT_06s0004g03340.t01	Wine grape	plastid	49.82	45.07
Zm00001d030701_P001	Maize	extracellular	73.09	34.66
Os03t0781400-01	Rice	plastid	25.09	23.08

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	Gene3D:3.30.70.260	Gene3D:3.40.50.1360	MapMan:3.9.2.1
EntrezGene:4335430	EMBL:AK103443	ProteinID:BAF14333.1	ProteinID:BAS88487.1	ProteinID:CAD40521.2	ProteinID:EAZ30157.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009052	GO:GO:0009987	GO:GO:0016853	HAMAP:MF_00170	InterPro:NagB/RpiA_transferase-like	EnsemblPlantsGene:Os04g0306400
EnsemblPlants:Os04t0306400-01	PFAM:PF06026	PANTHER:PTHR43748	PANTHER:PTHR43748:SF2	UniProt:Q7XVP0	InterPro:Ribose5P_isomerase_typA
InterPro:Ribose5P_isomerase_typA_subgr	SUPFAM:SSF100950	SUPFAM:SSF75445	TIGRFAMs:TIGR00021	UniParc:UPI00001B1B4C	RefSeq:XP_015633390.1
SEG:seg	:	:	:	:	:

Description

ribose-5-phosphate isomeraseRibose 5-phosphate isomerase family protein. (Os04t0306400-01)

Coordinates

chr4:+:13802278..13803456

Molecular Weight (calculated)

28632.8 Da

IEP (calculated)

5.404

GRAVY (calculated)

0.054

Length

275 amino acids

Sequence
(BLAST)

001: MGSFASPLDA APAPPTAKPS PPPAPAPANG LVTQEELKRV AAHRAVEMVE PGMTLGLGTG STAAHALDRL GDLLRSGELA AVAGVPTSLK TEAHAARVGI
101: PMLPLGEAGG IDLSIDGADE VDPELNLVKG RGGSLLREKM IEGSGGRFVV IVDESKLVPR LGCTGAVPVE VVPFGCDHTL GLVRKVFDGL PGFSARLRTV
201: ASKDGEGKEE MFVTDNGNYI VEMFFEDGIR GDLNEISDRL LRITGVVEHG MFLGMATSVV VAKKDGTVAL LHKKK

Best Arabidopsis Sequence Match ( AT1G71100.1 )
(BLAST)

001: MGSAFDPLVT ATEDLAAVNS APPLSNLTQE ELKKIAAYKA VEFVESGMVI GLGTGSTAKH AVARISELLR EGKLKDIIGI PTSTTTHEQA VSLGIPLSDL
101: DSHPVVDLSI DGADEVDPAL NLVKGRGGSL LREKMIEGAS KKFVVIVDES KLVKYIGGSG LAVPVEVVPF CCDFTRGKLE ELFRDSGCVA KLRMKIGSNG
201: EEAAPAVTDN RNYVVDLYLE RDIGDLEVAS EAILRFPGVV EHGMFLGMAT TLIVAGKFGV TVKDRFG

Arabidopsis Description

RPI1Probable ribose-5-phosphate isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C998]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.