Factsheet for Bra007961.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03702	Canola	cytosol	99.23	99.23
AT1G71100.1	Thale cress	cytosol	83.78	81.27
Bra014328.1-P	Field mustard	cytosol	71.04	68.91
VIT_01s0011g04630.t01	Wine grape	cytosol	69.5	66.91
KRG90972	Soybean	cytosol	68.34	66.79
KRH35797	Soybean	cytosol, mitochondrion	67.95	66.17
PGSC0003DMT400015282	Potato	cytosol	67.57	65.79
PGSC0003DMT400078358	Potato	cytosol, plastid	67.95	65.67
Solyc05g008370.1.1	Tomato	cytosol	67.18	64.93
GSMUA_Achr3P29130_001	Banana	cytosol, mitochondrion	50.97	62.56
Bra024892.1-P	Field mustard	cytosol	61.78	59.7
GSMUA_Achr4P11200_001	Banana	cytosol	58.3	58.98
VIT_06s0004g03340.t01	Wine grape	plastid	67.95	57.89
GSMUA_Achr4P06520_001	Banana	cytosol	56.76	56.76
GSMUA_Achr4P03710_001	Banana	plastid	56.37	55.94
Bra040120.1-P	Field mustard	plastid	56.37	53.09
EES09254	Sorghum	cytosol	53.28	53.08
Bra040406.1-P	Field mustard	plastid	55.6	52.17
TraesCS2D01G271700.1	Wheat	cytosol	51.35	51.95
OQU79375	Sorghum	cytosol	27.03	50.72
Os04t0306400-01	Rice	cytosol	50.97	48.0
HORVU2Hr1G066480.1	Barley	plastid	35.14	44.61
Zm00001d052482_P001	Maize	cytosol	15.06	36.79
Bra033747.1-P	Field mustard	plastid	26.64	24.38
Zm00001d030701_P001	Maize	extracellular	52.51	23.45

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	Gene3D:3.30.70.260	Gene3D:3.40.50.1360	MapMan:3.9.2.1
EnsemblPlantsGene:Bra007961	EnsemblPlants:Bra007961.1	EnsemblPlants:Bra007961.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004751
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009052	GO:GO:0009058	GO:GO:0009628
GO:GO:0009987	GO:GO:0030244	GO:GO:0046109	GO:GO:0080167	UniProt:M4CUR6	HAMAP:MF_00170
InterPro:NagB/RpiA_transferase-like	PFAM:PF06026	PANTHER:PTHR43748	PANTHER:PTHR43748:SF2	InterPro:Ribose5P_isomerase_typA	InterPro:Ribose5P_isomerase_typA_subgr
SUPFAM:SSF100950	SUPFAM:SSF75445	TIGRFAMs:TIGR00021	UniParc:UPI0002546C2B	:	:

Description

AT1G71100 (E=5e-118) RSW10 | RSW10 (RADIAL SWELLING 10); ribose-5-phosphate isomerase

Coordinates

chrA02:+:12140068..12140847

Molecular Weight (calculated)

27258.0 Da

IEP (calculated)

6.042

GRAVY (calculated)

0.086

Length

259 amino acids

Sequence
(BLAST)

001: MGSASNPLVT SSVVDDSPLP SNLTQDDLKK LAAYKAVEYV KSGMVVGLGT GSTAKHAVAR ISELLRQGKL RDIIGIPTST TTHEQAVSLG IPLSDLDSHP
101: VVDLSIDGAD EVDPALNLVK GRGGSLLREK MVEGASKKFV VIVDESKLVK HIGGSGLAVP VEVVPFCCNF TRGKLEELFR EAGCKAKLRV MSGGEAAAVT
201: DNGNYVVDLY LERDMGDLEA ASEKILRLPG VVEHGMFLGI ATTLIVAGKS GVTVKDRFG

Best Arabidopsis Sequence Match ( AT1G71100.1 )
(BLAST)

001: MGSAFDPLVT ATEDLAAVNS APPLSNLTQE ELKKIAAYKA VEFVESGMVI GLGTGSTAKH AVARISELLR EGKLKDIIGI PTSTTTHEQA VSLGIPLSDL
101: DSHPVVDLSI DGADEVDPAL NLVKGRGGSL LREKMIEGAS KKFVVIVDES KLVKYIGGSG LAVPVEVVPF CCDFTRGKLE ELFRDSGCVA KLRMKIGSNG
201: EEAAPAVTDN RNYVVDLYLE RDIGDLEVAS EAILRFPGVV EHGMFLGMAT TLIVAGKFGV TVKDRFG

Arabidopsis Description

RPI1Probable ribose-5-phosphate isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C998]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.