Factsheet for VIT_01s0011g04630.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g03340.t01	Wine grape	plastid	93.68	82.89
KRG90972	Soybean	cytosol	79.93	81.13
KRH35797	Soybean	cytosol, mitochondrion	79.93	80.83
PGSC0003DMT400015282	Potato	cytosol	77.32	78.2
Solyc05g008370.1.1	Tomato	cytosol	75.09	75.37
PGSC0003DMT400078358	Potato	cytosol, plastid	74.35	74.63
AT2G01290.1	Thale cress	cytosol	69.89	70.94
CDX77814	Canola	cytosol	69.14	69.92
CDY09514	Canola	cytosol	67.29	69.88
CDY03702	Canola	cytosol	66.91	69.5
Bra007961.1-P	Field mustard	cytosol	66.91	69.5
CDY37370	Canola	cytosol	68.77	69.29
CDY40387	Canola	cytosol	68.77	69.29
Bra014328.1-P	Field mustard	cytosol	68.77	69.29
AT1G71100.1	Thale cress	cytosol	68.77	69.29
CDY17683	Canola	cytosol	68.4	64.11
GSMUA_Achr3P29130_001	Banana	cytosol, mitochondrion	49.81	63.51
GSMUA_Achr4P11200_001	Banana	cytosol	59.11	62.11
Bra024892.1-P	Field mustard	cytosol	60.59	60.82
GSMUA_Achr4P06520_001	Banana	cytosol	56.88	59.07
GSMUA_Achr4P03710_001	Banana	plastid	56.13	57.85
VIT_14s0030g01900.t01	Wine grape	plastid	59.11	56.18
EES09254	Sorghum	cytosol	52.79	54.62
TraesCS2D01G271700.1	Wheat	cytosol	49.81	52.34
Os04t0306400-01	Rice	cytosol	51.67	50.55
OQU79375	Sorghum	cytosol	25.28	49.28
HORVU2Hr1G066480.1	Barley	plastid	33.83	44.61
Zm00001d052482_P001	Maize	cytosol	17.1	43.4
VIT_10s0092g00090.t01	Wine grape	cytosol	23.05	27.07
Zm00001d030701_P001	Maize	extracellular	52.42	24.31

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	EntrezGene:100247460	wikigene:100247460	Gene3D:3.30.70.260
Gene3D:3.40.50.1360	MapMan:3.9.2.1	ProteinID:CCB50848	ProteinID:CCB50848.1	UniProt:F6HFJ9	EMBL:FN595752
GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009052	GO:GO:0009987	EntrezGene:LOC100247460	wikigene:LOC100247460	HAMAP:MF_00170	InterPro:NagB/RpiA_transferase-like
PFAM:PF06026	PANTHER:PTHR43748	PANTHER:PTHR43748:SF2	InterPro:Ribose5P_isomerase_typA	InterPro:Ribose5P_isomerase_typA_subgr	SUPFAM:SSF100950
SUPFAM:SSF75445	TIGR:TC59181	TIGR:TC67448	TIGRFAMs:TIGR00021	UniParc:UPI0001982980	ArrayExpress:VIT_01s0011g04630
EnsemblPlantsGene:VIT_01s0011g04630	EnsemblPlants:VIT_01s0011g04630.t01	unigene:Vvi.6869	RefSeq:XP_002284079	RefSeq:XP_002284079.1	SEG:seg

Description

No Description!

Coordinates

chr1:-:4169977..4171316

Molecular Weight (calculated)

29099.6 Da

IEP (calculated)

6.400

GRAVY (calculated)

0.112

Length

269 amino acids

Sequence
(BLAST)

001: MAIAYPHFIG SEKSAMETGI ILSPSSPSPS LPHVILTQDE LKKIAAYKAV EYVESGMVLG LGTGSTAKHA VDRIGELLRQ GKLKNIVGIP TSKKTHEQAV
101: SLGIPLSDLD SHPILDLAID GADEVDPYLN LVKGRGGSLL REKMVEGACK KFIVIVDESK LVNHLGGSGL AMPVEIVPFC WKFTAQRLQM FFEESGCVAK
201: LRTYENGEPF VTDNRNYVVD LYFKREIGDL KVASDAILRL AGVVEHGMFL GMATTLIVAG ECGVVVKDK

Best Arabidopsis Sequence Match ( AT2G01290.1 )
(BLAST)

001: MALAYDPLFI TSDKSLSAFD VASSPPQPMN LTQDELKRIA AYKAVEFVES GMVLGLGTGS TAKHAVDRIG ELLRQGKLEN IVGIPTSKKT QEQALSLGIP
101: LSDLDAHPVI DLSIDGADEV DPFLNLVKGR GGSLLREKMI EGASKKFVVI VDDSKMVKHI GGSKLALPVE IVPFCWKFTA EKLRSLLEGY GCEANLRLGE
201: KGKAFVTDNG NYIVDMHVEE DMGDLGAVSD AILRLPGVVE HGMFLDMAST VIIAGELGVK IKNKH

Arabidopsis Description

RPI2Probable ribose-5-phosphate isomerase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.