Factsheet for PGSC0003DMT400078358

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 3
mitochondrion 1
peroxisome 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g008370.1.1	Tomato	cytosol	97.76	97.76
PGSC0003DMT400015282	Potato	cytosol	82.84	83.46
VIT_01s0011g04630.t01	Wine grape	cytosol	74.63	74.35
KRG90972	Soybean	cytosol	73.51	74.34
KRH35797	Soybean	cytosol, mitochondrion	73.51	74.06
Bra007961.1-P	Field mustard	cytosol	65.67	67.95
CDY03702	Canola	cytosol	65.67	67.95
VIT_06s0004g03340.t01	Wine grape	plastid	76.87	67.76
CDY09514	Canola	cytosol	65.3	67.57
AT1G71100.1	Thale cress	cytosol	65.3	65.54
AT2G01290.1	Thale cress	cytosol	64.55	65.28
CDY37370	Canola	cytosol	64.93	65.17
CDY40387	Canola	cytosol	64.55	64.79
Bra014328.1-P	Field mustard	cytosol	64.55	64.79
CDX77814	Canola	cytosol	63.06	63.53
CDY17683	Canola	cytosol	65.3	60.98
GSMUA_Achr3P29130_001	Banana	cytosol, mitochondrion	47.01	59.72
Bra024892.1-P	Field mustard	cytosol	58.21	58.21
GSMUA_Achr4P06520_001	Banana	cytosol	55.22	57.14
GSMUA_Achr4P11200_001	Banana	cytosol	54.48	57.03
GSMUA_Achr4P03710_001	Banana	plastid	54.48	55.94
PGSC0003DMT400050076	Potato	cytosol, plastid	58.21	53.42
EES09254	Sorghum	cytosol	51.12	52.69
TraesCS2D01G271700.1	Wheat	cytosol	47.39	49.61
OQU79375	Sorghum	cytosol	25.37	49.28
Os04t0306400-01	Rice	cytosol	48.88	47.64
HORVU2Hr1G066480.1	Barley	plastid	33.58	44.12
Zm00001d052482_P001	Maize	cytosol	17.16	43.4
Zm00001d030701_P001	Maize	extracellular	51.12	23.62
PGSC0003DMT400054453	Potato	plastid	25.37	20.99

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	EntrezGene:102603019	Gene3D:3.30.70.260	Gene3D:3.40.50.1360
MapMan:3.9.2.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009052	GO:GO:0009987	UniProt:M1CZY5	HAMAP:MF_00170	InterPro:NagB/RpiA_transferase-like
PFAM:PF06026	EnsemblPlantsGene:PGSC0003DMG400030509	PGSC:PGSC0003DMG400030509	EnsemblPlants:PGSC0003DMT400078358	PANTHER:PTHR43748	PANTHER:PTHR43748:SF2
InterPro:Ribose5P_isomerase_typA	InterPro:Ribose5P_isomerase_typA_subgr	SUPFAM:SSF100950	SUPFAM:SSF75445	TIGRFAMs:TIGR00021	UniParc:UPI000295A28C
RefSeq:XP_006344213.1	SEG:seg	:	:	:	:

Description

Ribose-5-phosphate isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400030509]

Coordinates

chr5:-:3927363..3930287

Molecular Weight (calculated)

28577.0 Da

IEP (calculated)

6.041

GRAVY (calculated)

0.206

Length

268 amino acids

Sequence
(BLAST)

001: MAVAYPQFFG TKKVDTSLMV SSSSSVSPVI LSQDELKKVA AYKAVEFVES GMVVGLGTGS TAKHAVDKIA ELLHSGKLKN IVGIPTSKIT HEQAVSLGIP
101: LSDLNKHPIV DLAIDGADEV DPQMNLVKGR GGSLLREKMV EAATKKFIVI VDESKLVNYI GGSGLAMPVE IVPFCWEFTL KRLEMLFIEA GCVGKLRTAG
201: GSGGEEPYVT DNGNYIIDLY FKKDMGDLKD ASDAILRLAG VVEHGMFIDM ATTVIVAGKL GVSVTNKL

Best Arabidopsis Sequence Match ( AT1G71100.1 )
(BLAST)

001: MGSAFDPLVT ATEDLAAVNS APPLSNLTQE ELKKIAAYKA VEFVESGMVI GLGTGSTAKH AVARISELLR EGKLKDIIGI PTSTTTHEQA VSLGIPLSDL
101: DSHPVVDLSI DGADEVDPAL NLVKGRGGSL LREKMIEGAS KKFVVIVDES KLVKYIGGSG LAVPVEVVPF CCDFTRGKLE ELFRDSGCVA KLRMKIGSNG
201: EEAAPAVTDN RNYVVDLYLE RDIGDLEVAS EAILRFPGVV EHGMFLGMAT TLIVAGKFGV TVKDRFG

Arabidopsis Description

RPI1Probable ribose-5-phosphate isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C998]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.