CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU79375	Sorghum	cytosol	45.38	85.51
GSMUA_Achr3P29130_001	Banana	cytosol, mitochondrion	53.08	65.4
GSMUA_Achr4P11200_001	Banana	cytosol	61.92	62.89
GSMUA_Achr4P03710_001	Banana	plastid	62.31	62.07
GSMUA_Achr4P06520_001	Banana	cytosol	61.54	61.78
CDY37370	Canola	cytosol	56.54	55.06
KRH35797	Soybean	cytosol, mitochondrion	55.77	54.51
AT2G01290.1	Thale cress	cytosol	55.38	54.34
CDY40387	Canola	cytosol	55.38	53.93
Bra014328.1-P	Field mustard	cytosol	55.38	53.93
KRG90972	Soybean	cytosol	54.62	53.58
Bra007961.1-P	Field mustard	cytosol	53.08	53.28
CDY03702	Canola	cytosol	53.08	53.28
AT1G71100.1	Thale cress	cytosol	54.62	53.18
CDX77814	Canola	cytosol	54.23	53.01
CDY09514	Canola	cytosol	52.69	52.9
VIT_01s0011g04630.t01	Wine grape	cytosol	54.62	52.79
PGSC0003DMT400015282	Potato	cytosol	53.85	52.63
PGSC0003DMT400078358	Potato	cytosol, plastid	52.69	51.12
Solyc05g008370.1.1	Tomato	cytosol	52.69	51.12
CDY17683	Canola	cytosol	53.85	48.78
Bra024892.1-P	Field mustard	cytosol	48.46	47.01
VIT_06s0004g03340.t01	Wine grape	plastid	54.62	46.71
KXG34505	Sorghum	plastid	48.46	41.31
KXG37436	Sorghum	plastid	26.15	23.21
EES13034	Sorghum	cytosol	7.69	18.18
EER98053	Sorghum	cytosol	7.69	18.18

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	Gene3D:3.30.70.260	Gene3D:3.40.50.1360	MapMan:3.9.2.1
EntrezGene:8069304	UniProt:C5Y4J8	EnsemblPlants:EES09254	ProteinID:EES09254	ProteinID:EES09254.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004751	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009052
GO:GO:0009987	HAMAP:MF_00170	InterPro:NagB/RpiA_transferase-like	ProteinID:OQU82862.1	PFAM:PF06026	PANTHER:PTHR43748
PANTHER:PTHR43748:SF2	MetaCyc:PWY-1861	MetaCyc:PWY-5723	InterPro:Ribose5P_isomerase_typA	InterPro:Ribose5P_isomerase_typA_subgr	EnsemblPlantsGene:SORBI_3005G033000
SUPFAM:SSF100950	SUPFAM:SSF75445	unigene:Sbi.12058	TIGRFAMs:TIGR00021	UniParc:UPI0001A86822	RefSeq:XP_002450266.1

Description

hypothetical protein

Coordinates

chr5:-:2939026..2940716

Molecular Weight (calculated)

27003.7 Da

IEP (calculated)

5.961

GRAVY (calculated)

0.138

Length

260 amino acids

Sequence
(BLAST)

001: MGSAAATSPP PSGKLTQDEL KRVAAHRAVE FVEPGMTLGL GTGSTAAHAL DRLGDLLRAG ALPGVAGVPT SLKTEAHASA VGIPLLPLDA ASGARIALSI
101: DGADEVDPDL NLVKGRGGSL LREKMIEGAG DRFVVIVDES KLVPRLGCTG AIPVEVIPFG APHTLGLIRN LFDGVSGFHA RLRTAPAAKG EDLEAPFVTD
201: NGNYIVEMFF EDGIRGDLRD ISDRLLRITG VVEHGMFLGM ATTVIVANKD GTVAVMGRKK

Best Arabidopsis Sequence Match ( AT2G01290.1 )
(BLAST)

001: MALAYDPLFI TSDKSLSAFD VASSPPQPMN LTQDELKRIA AYKAVEFVES GMVLGLGTGS TAKHAVDRIG ELLRQGKLEN IVGIPTSKKT QEQALSLGIP
101: LSDLDAHPVI DLSIDGADEV DPFLNLVKGR GGSLLREKMI EGASKKFVVI VDDSKMVKHI GGSKLALPVE IVPFCWKFTA EKLRSLLEGY GCEANLRLGE
201: KGKAFVTDNG NYIVDMHVEE DMGDLGAVSD AILRLPGVVE HGMFLDMAST VIIAGELGVK IKNKH

Arabidopsis Description

RPI2Probable ribose-5-phosphate isomerase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.