CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40387	Canola	cytosol	89.85	89.51
CDY37370	Canola	cytosol	89.47	89.14
AT2G01290.1	Thale cress	cytosol	87.22	87.55
CDY17683	Canola	cytosol	91.73	85.02
Bra024892.1-P	Field mustard	cytosol	80.08	79.48
VIT_01s0011g04630.t01	Wine grape	cytosol	69.92	69.14
KRH35797	Soybean	cytosol, mitochondrion	68.05	68.05
KRG90972	Soybean	cytosol	66.92	67.17
CDY03702	Canola	cytosol	65.04	66.8
PGSC0003DMT400015282	Potato	cytosol	66.17	66.17
CDY09514	Canola	cytosol	64.29	66.02
Solyc05g008370.1.1	Tomato	cytosol	64.29	63.81
PGSC0003DMT400078358	Potato	cytosol, plastid	63.53	63.06
GSMUA_Achr3P29130_001	Banana	cytosol, mitochondrion	49.25	62.09
VIT_06s0004g03340.t01	Wine grape	plastid	69.55	60.86
GSMUA_Achr4P11200_001	Banana	cytosol	55.64	57.81
GSMUA_Achr4P03710_001	Banana	plastid	56.39	57.47
GSMUA_Achr4P06520_001	Banana	cytosol	55.64	57.14
EES09254	Sorghum	cytosol	53.01	54.23
TraesCS2D01G271700.1	Wheat	cytosol	50.38	52.34
Os04t0306400-01	Rice	cytosol	53.76	52.0
CDY21110	Canola	plastid	53.38	51.64
CDY30018	Canola	plastid	53.38	51.45
CDY50757	Canola	plastid	53.38	51.45
CDY41900	Canola	plastid	53.01	51.27
OQU79375	Sorghum	cytosol	24.44	47.1
HORVU2Hr1G066480.1	Barley	plastid	34.21	44.61
Zm00001d052482_P001	Maize	cytosol	15.79	39.62
Zm00001d030701_P001	Maize	extracellular	53.38	24.48
CDY66019	Canola	cytosol	9.4	22.73
CDY29709	Canola	cytosol	9.4	22.73
CDY10254	Canola	cytosol	9.4	22.73
CDY06683	Canola	cytosol	9.4	22.73
CDX96931	Canola	cytosol	9.4	22.73
CDY49016	Canola	plastid	23.68	22.26
CDY49497	Canola	plastid	22.93	20.82
CDY21109	Canola	cytosol	12.41	12.64

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	Gene3D:3.30.70.260	Gene3D:3.40.50.1360	MapMan:3.9.2.1
GO:A0A078CP26	EnsemblPlants:CDX77814	ProteinID:CDX77814	ProteinID:CDX77814.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004751	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009052	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00128861001	HAMAP:MF_00170	InterPro:NagB/RpiA_transferase-like	PFAM:PF06026	PANTHER:PTHR43748	PANTHER:PTHR43748:SF2
MetaCyc:PWY-1861	MetaCyc:PWY-5723	InterPro:Ribose5P_isomerase_typA	InterPro:Ribose5P_isomerase_typA_subgr	SUPFAM:SSF100950	SUPFAM:SSF75445
TIGRFAMs:TIGR00021	UniPathway:UPA00115	UniParc:UPI0004EE5EB7	SEG:seg	:	:

Description

BnaC07g20680D

Coordinates

chrLK031812:-:1995662..1996545

Molecular Weight (calculated)

28927.3 Da

IEP (calculated)

5.718

GRAVY (calculated)

-0.048

Length

266 amino acids

Sequence
(BLAST)

001: MALAYDPLFI TSDKSPIDVP SPPPPSMTLT QDELKRIAAY KAVDFVQSNT VLGLGTGSTA KHAVDRIGEL LRQGKLENIV GIPTSKKTEE QALSLGIPLS
101: DLDAHPVIDL SIDGADEVDP CLNLVKGRGG SLLREKMIEG ASKKFVVIVD ESKMVKHIGG SKMALPVEIV PFCWKFTAER LRRVMEGYGC EAKLRLGEKG
201: KAFVTDNGNY IVDMYLEKDM GDLNVVSDEI LRLPGVVEHG MFLDMASTVI IAGELGVKIK NKHSSY

Best Arabidopsis Sequence Match ( AT2G01290.1 )
(BLAST)

001: MALAYDPLFI TSDKSLSAFD VASSPPQPMN LTQDELKRIA AYKAVEFVES GMVLGLGTGS TAKHAVDRIG ELLRQGKLEN IVGIPTSKKT QEQALSLGIP
101: LSDLDAHPVI DLSIDGADEV DPFLNLVKGR GGSLLREKMI EGASKKFVVI VDDSKMVKHI GGSKLALPVE IVPFCWKFTA EKLRSLLEGY GCEANLRLGE
201: KGKAFVTDNG NYIVDMHVEE DMGDLGAVSD AILRLPGVVE HGMFLDMAST VIIAGELGVK IKNKH

Arabidopsis Description

RPI2Probable ribose-5-phosphate isomerase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.