Factsheet for Zm00001d030701_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU79375	Sorghum	cytosol	21.55	90.58
TraesCS2D01G271700.1	Wheat	cytosol	34.48	78.12
Os04t0306400-01	Rice	cytosol	34.66	73.09
GSMUA_Achr3P29130_001	Banana	cytosol, mitochondrion	24.14	66.35
HORVU2Hr1G066480.1	Barley	plastid	22.59	64.22
GSMUA_Achr4P11200_001	Banana	cytosol	27.93	63.28
GSMUA_Achr4P03710_001	Banana	plastid	27.93	62.07
GSMUA_Achr4P06520_001	Banana	cytosol	27.59	61.78
KRH35797	Soybean	cytosol, mitochondrion	25.52	55.64
KRG90972	Soybean	cytosol	25.17	55.09
CDY37370	Canola	cytosol	25.17	54.68
Bra014328.1-P	Field mustard	cytosol	25.0	54.31
CDY40387	Canola	cytosol	25.0	54.31
AT2G01290.1	Thale cress	cytosol	24.66	53.96
CDX77814	Canola	cytosol	24.48	53.38
Zm00001d052482_P001	Maize	cytosol	9.66	52.83
AT1G71100.1	Thale cress	cytosol	24.31	52.81
PGSC0003DMT400015282	Potato	cytosol	24.14	52.63
CDY03702	Canola	cytosol	23.45	52.51
Bra007961.1-P	Field mustard	cytosol	23.45	52.51
VIT_01s0011g04630.t01	Wine grape	cytosol	24.31	52.42
CDY09514	Canola	cytosol	23.28	52.12
PGSC0003DMT400078358	Potato	cytosol, plastid	23.62	51.12
Solyc05g008370.1.1	Tomato	cytosol	23.45	50.75
CDY17683	Canola	cytosol	24.14	48.78
Bra024892.1-P	Field mustard	cytosol	21.72	47.01
VIT_06s0004g03340.t01	Wine grape	plastid	24.48	46.71
Zm00001d018936_P001	Maize	cytosol, extracellular	22.24	31.85
Zm00001d013135_P002	Maize	plastid	11.21	20.25

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	Gene3D:3.30.70.260	Gene3D:3.40.50.1360	MapMan:3.9.2.1
EMBL:BT067949	UniProt:C0PI30	GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009052	GO:GO:0009987	GO:GO:0016853	HAMAP:MF_00170
InterPro:Myb/SANT-like_dom	InterPro:NagB/RpiA_transferase-like	ProteinID:ONM01411.1	PFAM:PF06026	PFAM:PF12776	PANTHER:PTHR31704
PANTHER:PTHR31704:SF67	InterPro:Ribose5P_isomerase_typA	InterPro:Ribose5P_isomerase_typA_subgr	SUPFAM:SSF100950	SUPFAM:SSF75445	TIGRFAMs:TIGR00021
UniParc:UPI000195CCE8	EnsemblPlantsGene:Zm00001d030701	EnsemblPlants:Zm00001d030701_P001	EnsemblPlants:Zm00001d030701_T001	SEG:seg	:

Description

Probable ribose-5-phosphate isomerase 2

Coordinates

chr1:+:154400174..154406420

Molecular Weight (calculated)

63275.7 Da

IEP (calculated)

6.411

GRAVY (calculated)

-0.312

Length

580 amino acids

Sequence
(BLAST)

001: MGSAAASPQP SGNLTQDELK RVAAHRAVEF VESGMTLGLG TGSTAAHALD RLGDLLRAGA LPGVAGVPTS LKTEAHAARV GIPLLPLDAA SGASIRLSID
101: GADEVDPDLN LVKGRGGSLL REKMIEGAGD RFVVIVDESK LVPRLGCTGA VPVEVIPFGA PHTLGLIRKV FDGVPGFHAR LRTVPAANGE DSDAPFLTDN
201: GNYIVEMFFE DGIRGDLLDI SDRLLRITGV IEHGMFLGMA TTVIVANKDG TVTVINKKKM NQAVSSTSTR GRGKSERVWT YFEDEALLKA LFELSLDPKW
301: KSEGSFKNGY LSVLKATLAE KIPGCGLTAV PHIESRVRHF RTKYGAIEVM LANSGFSWDE NRKMVQCEKQ QYEDHCKRHP DAKGLYGISF PHLDTLAAIY
401: GKDIATGKGA EGLGDAISNL EKEITLEESH DREVEEDSMS RETPRWASDR NLLDSTSSTS KRRKRDKGNE VRKSSDPFLD MLGEFRDDLK NASNHFGKMT
501: EIMEREAKLQ EEAAHKDPMQ VLQQKSITEL TRLGFTSTEL VKAASVFVNV PNQMTMLFAL PETLRRGFIL NMLANEAQKN

Best Arabidopsis Sequence Match ( AT2G01290.1 )
(BLAST)

001: MALAYDPLFI TSDKSLSAFD VASSPPQPMN LTQDELKRIA AYKAVEFVES GMVLGLGTGS TAKHAVDRIG ELLRQGKLEN IVGIPTSKKT QEQALSLGIP
101: LSDLDAHPVI DLSIDGADEV DPFLNLVKGR GGSLLREKMI EGASKKFVVI VDDSKMVKHI GGSKLALPVE IVPFCWKFTA EKLRSLLEGY GCEANLRLGE
201: KGKAFVTDNG NYIVDMHVEE DMGDLGAVSD AILRLPGVVE HGMFLDMAST VIIAGELGVK IKNKH

Arabidopsis Description

RPI2Probable ribose-5-phosphate isomerase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.